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Tibanna helps you run your genomic pipelines on Amazon cloud (AWS). It is used by the 4DN DCIC (4D Nucleome Data Coordination and Integration Center) to process data. Tibanna supports CWL/WDL (w/ docker), Snakemake (w/ conda) and custom Docker/shell command.

React component for visualizing CWL-like workflows (and similar data)

main repository for SMaHT pipelines

A collection of software to work with genomic variants

various util modules shared amongst several projects in our organization

SMaHT Data Analysis Center Web Portal

This is an extension of Tibanna that integrates with 4DN/CGAP/SMaHT data portals.

Common components for use by 4DN, CGAP and SMaHT portal(s)

The SnoVault general purpose hybrid object-relational database

components for RNA-seq pipelines

Repository for data models common to Park Lab ENCODE style projects

foursight for smaht-portal

Cloud Formation templates for 4dn-dcic AWS environments

Git (w/ ssh) binaries for AWS Lambda

shared components for analysis pipelines

pipelines documentation

pipeline utilities

components for alignment pipelines