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Common Workflow Language

CWL documents describe workflows made of command line data analysis tools in a portable, reproducible, and reusable fashion.

Here are 229 public repositories matching this topic...

common-workflow-language

common-workflow-language / common-workflow-language

Repository for the CWL standards. Use https://cwl.discourse.group/ for support 😊

science workflow containers common-workflow-language cwl workflows commonwl sciworkflows

Updated Dec 20, 2025
Common Workflow Language

DataBiosphere / toil

A WDL, CWL and Python API supporting easy-to-use workflow engine. It is scalable, efficient and cross-platform (Linux/macOS).

python kubernetes aws workflow pipeline slurm mesos wdl common-workflow-language gridengine cwl workflow-description-language

Updated Dec 19, 2025
Python

arvados / arvados

An open source platform for managing and analyzing biomedical big data

ruby python go docker aws workflow cloud bioinformatics genomics azure workflow-engine cluster bigdata gcp cwl arvados

Updated Dec 24, 2025
Go

cwltool

common-workflow-language / cwltool

Common Workflow Language reference implementation

science containers common-workflow-language cwl workflows commonwl sciworkflows

Updated Dec 21, 2025
Python

rabix / composer

Visual and code editor for Common Workflow Language

editor ide common-workflow-language cwl

Updated Jan 11, 2023
TypeScript

CBICA / CaPTk

Cancer Imaging Phenomics Toolkit (CaPTk) is a software platform to perform image analysis and predictive modeling tasks. Documentation: https://cbica.github.io/CaPTk

Updated Dec 9, 2023
C++

Barski-lab / cwl-airflow

Python package to extend Airflow functionality with CWL1.1 support

workflow containers common-workflow-language cwl dag commonwl cwl-airflow cwl-descriptor

Updated Oct 25, 2023
Python

EBI-Metagenomics / emg-viral-pipeline

VIRify: detection of phages and eukaryotic viruses from metagenomic and metatranscriptomic assemblies

workflow pipeline nextflow viruses cwl

Updated Dec 17, 2025
Python

reanahub / reana

REANA: Reusable research data analysis platform

kubernetes reproducible-research containers cwl research-data reproducible-workflows reusable-science

Updated Nov 28, 2025
Python

dockstore / dockstore

An app store for scientific workflows, tools, notebooks, and services

docker workflow bioinformatics nextflow containers wdl cwl dockstore

Updated Dec 18, 2025
Java

ga4gh / workflow-execution-service-schemas

The WES API is a standard way to run and manage portable workflows.

workflow wdl ga4gh cwl

Updated Dec 9, 2025

ResearchObject / ro-crate-py

Python library for RO-Crate

metadata galaxy cwl researchobject biohackeu20 biohackcovid20 ro-crate

Updated Dec 18, 2025
Python

common-workflow-library / bio-cwl-tools

CWL CommandLineTool descriptions for biology/life-sciences related applications

cwl

Updated Mar 25, 2025
Common Workflow Language

rabix / cwl-svg

A library for generating an interactive SVG visualization of CWL workflows

visualization svg workflow bioinformatics cwl

Updated Aug 15, 2024
TypeScript

rabix / bunny

[Legacy] Executor for CWL workflows. Executes sbg:draft-2 and CWL 1.0

java docker workflow executor common-workflow-language cwl commonwl

Updated Nov 18, 2020
Common Workflow Language

4dn-dcic / tibanna

Tibanna helps you run your genomic pipelines on Amazon cloud (AWS). It is used by the 4DN DCIC (4D Nucleome Data Coordination and Integration Center) to process data. Tibanna supports CWL/WDL (w/ docker), Snakemake (w/ conda) and custom Docker/shell command.

docker aws bioinformatics snakemake aws-lambda pipelines conda wdl cwl aws-step-function wdl-workflow cwl-workflow snakemake-workflow u01ca200059 ot2od032119

Updated Oct 16, 2025
Python

benten

rabix / benten

A language server for Common Workflow Language

editor workflow language-server ide common-workflow-language cwl cwl-documents

Updated Dec 6, 2023
Python

Duke-GCB / calrissian

CWL on Kubernetes

kubernetes cwl cwl-workflow cwl-workflows

Updated Sep 4, 2025
Python

rabix / cwl-ts

Typescript data model for Common Workflow Language

workflow typescript common-workflow-language cwl

Updated Mar 3, 2023
TypeScript

cwlviewer

common-workflow-language / cwlviewer

A web application to view and share Common Workflow Language workflows

java workflow common-workflow-language cwl workflows

Updated Dec 19, 2025
Java

Created by Peter Amstutz, John Chilton, Michael R. Crusoe, Nebojša Tijanić, and the CWL Community

Released January 2015

Followers: 14 followers
Organization: common-workflow-language
Website: github.com/topics/cwl
Wikipedia: Wikipedia