Materials on the analysis of microarray expression data; focus on re-analysis of public data ( http://tinyurl.com/cruk-microarray)
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Feb 21, 2017 - HTML
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microarray-data
Here are 38 public repositories matching this topic...
Deep learning methods for feature selection in gene expression autism data.
data-mining deep-learning neural-network feature-detection numpy gene-expression python3 feature-selection feature-extraction gene-annotation autism microarray-data ncbi-database gene-expression-profiles ttest google-colab features-extraction autism-data fisher-score annotated-genes
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Jun 21, 2022 - Jupyter Notebook
Bioinformatics course project - Fall 2020, analysis of genetic expression omnibus (GEO) data series of Acute Myeloid Leukemia
bioinformatics microarray microarray-data aml acute-myeloid-leukemia geoparse microarray-data-analysis genetic-expression-omnibus
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May 27, 2021 - Python
Collection of gene expression datasets
rna-seq gene-expression microarray microarray-data datasets microarray-data-analysis rna-seq-datasets transciptomics
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Oct 1, 2023
Tumor prediction from microarray data using 10 machine learning classifiers. Feature extraction from microarray data using various feature extraction algorithms.
python svm t-test cancer-genomics logistic-regression microarray-data gaussian-processes recursive-feature-elimination machine-learning-classifiers cancer-prediction sklearn-classifier meta-dataset gene-expressions
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Dec 21, 2020 - Python
A visualization support tool for advanced hierarchical clustering analysis. MLCut allows cutting dendrograms at multiple heights/levels. In other words, it allows to set multiple local similarity thresholds in potentially large dendrograms. It uses two coordinated views, one for the dentrogram (radial layout), and another for the original multid…
visualization time-series clustering gene-expression cut parallel-coordinates microarray-data interactive-visualizations hierarchical-clustering time-series-clustering dendrograms linked-views coordinated-views dendrogram cutting-dendrograms
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Apr 21, 2021 - JavaScript
An Efficeint and Fast Wrapper-based High-dimensional Feature Selection(SIFE) in MATLAB
wrapper matlab genetic-algorithm gene-expression high-dimensional-data feature-selection classification evolutionary-algorithms microarray-data medical-application high-dimensional set-based set-based-operators high-dimensionality integer-coding fuzzy-granulation integer-coded
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Jun 14, 2023 - MATLAB
Discriminant Analysis with Network PROcessing
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Dec 21, 2023 - Python
A python library to develop genomic data simulators
gwas linkage-disequilibrium simulator genomics simulation vcf dna population-genomics microarray-data population-genetics dna-sequences vcf-files gwas-dataset allele-frequencies hardy-weinberg-equilibrium genomics-data
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Aug 29, 2023 - Python
NOWAC data cleaning package
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Oct 29, 2018 - R
Generating expression signatures for disease using STARGEO
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Mar 29, 2016 - Jupyter Notebook
Transform, query, and merge tabular files with the expressionable Python module. This tool is used primarily for gene-expression data.
tsv json rna-seq biology filter tabular-data stata merge gene-expression msgpack hdf5 parquet pickle microarray-data transcription arff salmon kallisto transforming-files gct
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Jul 24, 2019 - HTML
This R script is used to analyze microarray data acquired by an Agilent SureScan Microarray Scanner.
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Jan 13, 2023 - R
protGear is a package for protein microarray data processing just before the main analysis.
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Feb 3, 2023 - R
Various python programs I use for the manipulation of SNP genotype datasets and other bioinformatics tasks. This repository features miscellaneous scripts to help work efficiently in common bioinformatics tasks I encounter. Use at own risk
microarray-data miscellaneous-scripts affymetrix snp-file snp-data snp-genotype-datasets bioinformatics-tasks microarray-design
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Apr 6, 2018 - Python
Code for the future "Classification of microarray data" paper.
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Jul 24, 2021 - Jupyter Notebook
Scripts using GEOquery package to fetch expression matrices and phenotypic data associated with GSE datasets
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Nov 18, 2019 - R
TriCluster and microCluster gene expression clustering algorithms
clustering gene-expression microarray-data clustering-algorithm microarrays biclusters 3-way-clustering 2-way-clustering bi-clusters
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Mar 29, 2020 - C++
Metadata used to process Illumina Infinium DNA methylation data with pylluminator
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Mar 5, 2025 - Python
EXIS is an interactive R shiny application for isoform-specific expression analysis.
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Jul 8, 2021 - R
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