MAAPster is a comprehensive tool to perform transcriptome analysis of human or mouse Affymetrix gene expression data

Bioinformatics course project - Fall 2020, analysis of genetic expression omnibus (GEO) data series of Acute Myeloid Leukemia

Collection of gene expression datasets

NormalizeQuantiles.jl implements quantile normalization

PHet: Heterogeneity-Preserving Discriminative Feature Selection for Subtype Discovery

Acute Myeloid Leukemia Microarray Analysis

Source code and description of GCSscore Package

Python package for processing and analyzing Illumina DNA methylation data

Tumor Identification Based on Machine Learning Analysis of Microarray Data

An R tool to detect and correct batch-effects in gene-expression data (Microarray and bulk-RNAseq))

"Identification of Biomarkers for Early-Stage Hepatocellular Carcinoma (HCC)" aims to address the critical global challenge of late-stage cancer diagnosis, which significantly lowers patient survival rates. It explores microarray gene expression datasets from GEO to identify potential early-stage biomarkers for improved patient outcomes.

A list of publicly available Microarray Gene Expression datasets with proper attribution and associated toolkits.

Identification for Key Pathways and Genes in Polycystic Ovary Syndrome (PCOS) using a multi-omics approach, as part of the Applied High Throughput Analysis course at Ghent University

Nextcast: a software suite to analyse and model toxicogenomics data

Analysis of long continuous stretches of homozygosity of the human genome.

In this project, we designed a pipeline to identify new biomarkers with microarray analysis. (AI & Intelligent Medicine, Spring 2022).

This R script is used to analyze microarray data acquired by an Agilent SureScan Microarray Scanner.

Scripts using GEOquery package to fetch expression matrices and phenotypic data associated with GSE datasets

Visualization of co-expression networks

Selection of genes to be cultured and studied on-board for the AcubeSAT nanosatellite project. Microarray data analysis in R. Meta-analysis in R. Literature review and more