Repository containing lists of all published ancient metagenomic (and related) samples and libraries

🌊 Robust workflows for gathering data about your local ocean.

Snakemake based framework for NGS data analysis and management

An open-source R package containing decontamination pipelines for low-biomass microbiome data

National workshop on microbiome informatics

Building a pipeline for automated 16S analysis from paired short-reads or long-reads

En este repositorio se presenta un código de R para poder hacer un análisis de datos Metagenómicos a partir de datos arrojados por un análisis taxonómico del programa KRAKEN 2

This repository provides the scripts used to analyze the metagenomics data from the paper Nicotinamide Riboside-Conditioned Microbiota Deflects High-Fat Diet-Induced Weight Gain in Mice.

TEIXEIRA, J. V. A.; SOUZA, E. C. Use of microbial fuel cell systems in wastewater treatment in connection with bioenergy generation. Desafios. Revista Interdisciplinar da Universidade Federal do Tocantins. Palmas, 2025. DOI: // Microbial fuel cells: Unveiling microbial diversity for sustainable wastewater treatment and bioenergy production

Jacobs Lab UCLA : Preprocess shotgun metagenomics data on the UCLA supercomputer, using either Biobakery tools or Kraken/Bracken.

Host plant rhizosphere microbiome analysis

a python sdk for the MGnify API

A simplified version of Kraken, ideal for learning metagenomic analysis. Explore taxonomic classification of DNA sequences and gain insights into microbial communities with this user-friendly educational tool. Perfect for beginners seeking to understand the fundamentals of metagenomics.

An automated pipeline for metagenomic assembly and gene annotation

This is a python package for analysis of metagenomics data.

This repository contains code for generating an interactive sunburst graphic for metagenomic analysis.

Web portal and API for the Curated Metagenomics Data project