An analysis tool that uses per-voxel statistical maps in conjunction with FSL atlases to create per-region statistical maps. Current usage includes the creation of regional maps of temporal signal to noise ratio.
Sparsely Reconstructed Graphs (SpaRG) for robust and interpretable fMRI analysis using GNNs and VAEs.
Code for my Master's Thesis "Deep Neural Encoding Models of the Human Visual Cortex to Predict fMRI Responses to Natural Visual Scenes" and my submission for the "Algonauts Project 2023 Challenge".
Analyses scripts used for Algermissen, J., Swart, J. C., Scheeringa, R., Cools, R., & den Ouden, H. E. (2021). Striatal BOLD and midfrontal theta power express motivation for action. Cerebral Cortex.
Analyses scripts used for Algermissen, J., Swart, J. C., Scheeringa, R., Cools, R., & den Ouden, H. E. (2024). Prefrontal signals precede striatal signals for biased credit assignment in motivational learning biases. Nature Communications.
shell script package for (pre)processing fmri data
Pipeline to analyze fMRI data with AFNI
Package to create group-averaged functional connectivity map for a list of ROI coordinates
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