DrEval is a toolkit that ensures drug response prediction evaluations are statistically sound, biologically meaningful, and reproducible.
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Dec 22, 2025 - Python
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drug-response-prediction
Here are 21 public repositories matching this topic...
Pipeline for testing drug response prediction models in a statistically and biologically sound way.
training workflow machine-learning bioinformatics deep-learning pipeline nextflow reproducible-research cross-validation drugs hyperparameter-tuning generalization cell-lines fair-principles nf-core robustness-assessment drug-response-prediction drug-response randomization-tests
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Dec 17, 2025 - Nextflow
CaDRReS-Sc is a framework for analyzing drug response heterogeneity based on single-cell RNA-seq data
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May 7, 2022 - Jupyter Notebook
Velodrome combines semi-supervised learning and out-of-distribution generalization (domain generalization) for drug response prediction and pharmacogenomics
bioinformatics pharmacogenomics transferlearning domain-generalization drug-response-prediction out-of-distribution-generalization
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Nov 17, 2021 - Python
Drug Response Estimation from single-cell Expression Profiles
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Jan 5, 2024 - C++
The Drug Response Prediction 2022 project in Computational Biology and Artificial Intelligence (COMBINE) Laboratory, McGill University.
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Mar 10, 2023 - Python
DeepResponse: Large Scale Prediction of Cancer Cell Line Drug Response with Deep Learning Based Pharmacogenomic Modelling
machine-learning deep-learning convolutional-neural-networks cancer-research multi-omics graph-neural-networks drug-response-prediction graph-transformer
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Dec 23, 2025 - Python
Deep Learning based Drug Response Predication with public Omics datasets
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Dec 8, 2022 - Python
Tensorflow implementation of PaccMann (drug sensitivity prediction)
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Sep 17, 2021 - Python
Python implementation of TRANSACT, a tool to transfer non-linear predictors of drug response from model systems to tumors.
python kernel-methods interpretability cell-lines tumors drug-response-prediction drug-response principal-vectors
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Nov 21, 2022 - HTML
Framework to build, evaluate, select, and compare ML classification and regression models using high-dimensional biological data and other covariates
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Oct 20, 2024 - Python
💊 Advanced Drug Response Prediction & Multi-Omics Platform Interactive computational biology dashboard with ML integration, synthetic CCLE/GDSC data, dose-response modeling, and biomarker discovery. Features 6-tab Streamlit interface, Random Forest predictions, and publication-quality visualizations.
machine-learning bioinformatics genomics synthetic-biology plotly computational-biology data-visualization artificial-intelligence scientific-computing drug-discovery data-science-portfolio cancer-research biotechnology precision-medicine biomedical-data-science multi-omics precision-oncology streamlit drug-response-prediction interactive-dashboard
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Dec 4, 2025 - Jupyter Notebook
The repo of the "Multi-omics alleviates the limitations of panel-sequencing for cancer drug response prediction" manuscript
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Nov 10, 2022 - R
Clinical and biological implications of differential expression of sex hormone-related genes in testicular cancer
machine-learning genomics signaling network-analysis transcriptomics regularized-linear-regression differential-gene-expression semi-supervised-clustering machine-lea drug-response-prediction sex-hormones testicular-cancer differential-protein-expression
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Mar 5, 2025 - R
Implementation of Percolate, an exponential family JIVE statistical model for multi-view integration
machine-learning pytorch exponential-family multi-omics jive multi-view drug-response-prediction glm-pca
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Oct 23, 2022 - Python
DeepResponse: Large Scale Prediction of Cancer Cell Line Drug Response with Deep Learning Based Pharmacogenomic Modelling
machine-learning deep-learning convolutional-neural-networks cancer-research multi-omics graph-neural-networks drug-response-prediction graph-transformer
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Jun 23, 2025 - Python
Pan Cancer Pan Treatment Github Repository
precision-medicine personalized-medicine precision-oncology multiomics drug-response-prediction pdx-models patient-derived
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Jul 30, 2025 - Jupyter Notebook
voronoi-diagram biomarker-discovery breast-cancer prostate-cancer sobel-filter drug-response-prediction circulating-tumor-cells circular-hough-transform difference-of-gaussian gastric-cancer tubulin-inhibitors intensity-histogram-thresholding tubulin-bundling tubulin-tyrosination transcription-factor-localization stationary-wavelet-transform feature-eccentricity microfluidics-chip-enrichment brca1-drug-resistance paclitaxel-therapy
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Aug 7, 2025 - MATLAB
CrossTx: Cross-cell line Transcriptomic Signature Predictions
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Jan 19, 2023 - Jupyter Notebook
Reproducible pipelines comparing bulk RNA-seq, single-cell (pseudobulk), and scFM embeddings (scGPT, scFoundation) for per-drug response prediction in cancer cell lines.
benchmark bioinformatics random-forest xgboost elastic-net single-cell-rna-seq machin bulk-rna-seq drug-response-prediction foundation-models scgpt
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Oct 15, 2025 - Jupyter Notebook
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