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1. tools tools Public

   Python package with helper tools for the nf-core community.

   Python 318 251

2. modules modules Public

   Repository to host tool-specific module files for the Nextflow DSL2 community!

   Nextflow 421 1.1k

3. rnaseq rnaseq Public

   RNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.

   Nextflow 1.3k 885

4. sarek sarek Public

   Analysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing

   Nextflow 583 538

5. configs configs Public

   Config files used to define parameters specific to compute environments at different Institutions

   Nextflow 110 370

6. proposals proposals Public

   Where new ideas for nf-core pipelines, special interest groups and more are proposed

   10 6