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Pull requests: nf-core/modules

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151 Open 6,632 Closed
151 Open 6,632 Closed
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Pull requests list

New module: Ribodetector
#9209 opened Oct 17, 2025 by maxibor Loading…
10 tasks done
🔧 update image and bioconda container for VueGen to latest version
#9201 opened Oct 16, 2025 by enryH Loading…
2
New align dedup bwamem
#9197 opened Oct 15, 2025 by eduard-watchmaker Loading…
17 tasks
EBI MGnify - ENA Genome uploader
#9177 opened Oct 8, 2025 by mberacochea • Draft
17 tasks
15
Add diann subworkflow and module
#9173 opened Oct 6, 2025 by pinin4fjords Loading…
17 tasks
80
adding homer merge peaks, and a peakcalling workflow
#9172 opened Oct 5, 2025 by cmatKhan Loading…
4
Hificnv—copy-number variant caller for PacBio HiFi long-read data new module Adding a new module Ready for Review
#9165 opened Oct 2, 2025 by chaochaowong Loading…
14 tasks done
@chaochaowong
3
POC: topics
#9159 opened Sep 30, 2025 by nvnieuwk • Draft
5
Add task.ext.suffix for CSVTK_CONCAT enhancement New feature or request
#9144 opened Sep 26, 2025 by LeonHafner Loading…
1 of 17 tasks
@LeonHafner
2
Add module seqfu/check
#9141 opened Sep 25, 2025 by georgette-femerling • Draft
5 of 17 tasks
1
feat: Integrate wave_singularity.py script for Singularity container HTTPS SIF URL reporting
#9079 opened Sep 16, 2025 by Copilot AI • Draft
@edmundmiller @Copilot
7918 pharokka update stub
#9055 opened Sep 13, 2025 by shivangi-7 • Draft
1
Deacon filter and update deacon index
#9034 opened Sep 11, 2025 by sofstam Loading…
8 of 17 tasks
2
Update CELLRANGER_MKREF
#9007 opened Sep 5, 2025 by lucacozzuto Loading…
2 of 17 tasks
1
Update CELLRANGER_MKGTF
#9006 opened Sep 5, 2025 by lucacozzuto Loading…
2 of 17 tasks
9
feat: samclip module new module Adding a new module Ready for Review
#8999 opened Sep 4, 2025 by emmcauley Loading…
13 of 17 tasks
1
12
Adds new Devcontainer Setup for use with Codespaces
#8983 opened Sep 2, 2025 by JulianFlesch Loading…
17 tasks
1
@JulianFlesch
First pass at POC for topics update for bwamem2 and dependencies
#8978 opened Sep 1, 2025 by maxulysse • Draft
17 tasks
5
Swap fasta_index_dna to nf-test - removing all remnants of pytests
#8962 opened Aug 27, 2025 by SPPearce Loading…
17 tasks
1
LINKS: Fix thread limit
#8958 opened Aug 27, 2025 by nschan Loading…
1
Example git repo with pip: in an environment
#8954 opened Aug 26, 2025 by edmundmiller Loading…
@edmundmiller
WIP: Use a non-mutable reference for tools
#8926 opened Aug 20, 2025 by maxulysse Loading…
17 tasks
lint + code polish unzip
#8924 opened Aug 19, 2025 by maxulysse Loading…
17 tasks
1
update module: spaceranger
#8911 opened Aug 15, 2025 by camlloyd Loading…
2 of 17 tasks
1
@camlloyd
14
Lint + code polish modules for sarek
#8891 opened Aug 12, 2025 by maxulysse • Draft
17 tasks
2
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