A Python toolkit for flow cytometry analysis supporting GatingML and FlowJo workspaces

Easily install and load packages from the tidyomics ecosystem

A Python library for reading and writing Flow Cytometry Standard (FCS) files

A data-centric flow/mass cytometry automated analysis framework

Biology-driven deep generative model for cell-type annotation in cytometry. Scyan is an interpretable model that also corrects batch-effect and can be used for debarcoding or population discovery.

Huge-scale, high-performance flow cytometry clustering in Julia

Image Mass Cytometry analysis pipeline

Fast embedding ot multidimensional datasets, great for cytometry data

FlowUtils is a Python package containing various utility functions related to flow cytometry analysis, primarily focused on compensation and transformation tasks commonly used within the flow community.

An R package for analyzing high-dimensional cytometry data using the tidyverse.

an interactive explorer for flow cytometry data

A clustering algorithm that will perform clustering on each of a time-series of discrete datasets, and explicitly track the evolution of clusters over time.

SuperCell for Cytometry data

Import script needed to build FluPRINT database from source 💻

Code and results from TotalSeqC antibody titration and pipeline benchmarking for CITE-seq experiments

Single-cell dimensionality reduction toolkit

Integration of multi-batch cytometry datasets

Official implementation of GateNet

Temporal clustering and tracking algorithm which fuses on FlowSOM and ChronoClust, specifically designed for analysing temporal cytometry data

Single-cell dimensionality reduction evaluation and benchmarking toolkit