Foldseek enables fast and sensitive comparisons of large structure sets.
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Jul 1, 2026 - C
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alignments
Here are 45 public repositories matching this topic...
Align Tools is just perfect Unity asset plugin to align gui object
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Jul 27, 2026 - C#
Scalable RNA-seq analysis
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Jan 12, 2021 - Python
⛏ HLA predictions from NGS shotgun data
alignments oxford-nanopore hla-prediction targeted-assemblies hla-sequence shotgun-sequence-datasets
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Jun 4, 2026 - Perl
⛰ covtobed | Convert the coverage track from a BAM file into a BED file
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Nov 6, 2025 - Makefile
Mini tool for arranging HTML elements along with ellipse subset shapes
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Oct 14, 2020 - JavaScript
🪱 PARASITE || A parallel sentence data preprocessing toolkit. Originally developed as a part of the `en-ru` winner submission of WMT20 Biomedical Translation Task.
natural-language-processing deep-learning machine-translation alignments preprocessing parallel-corpus crosslingual
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Jun 8, 2021 - Python
Fiji / ImageJ plugin for Imaging Alignment. This plugin manages two types of alignment: Manual Alignment and Automatic Alignment.
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Mar 12, 2026 - Java
Jupiter Bioinformatics (V2) uses the local sequence alignment algorithm and a few stored experiments for further experimentation on sequence alignment. It is an open source application designed in native JavaScript, that is able to align two sequences/texts in order to match the regions that are similar.
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Mar 18, 2022 - HTML
STRAC (Scalable Trace Comparison) http://arxiv.org/pdf/1910.03478
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Jun 5, 2023 - Roff
MICA-aligner is a new short-read aligner that is optimized in view of MIC's limitation and the extra parallelism inside each MIC core.
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Dec 24, 2023 - C
ProcessM: Real-Time Intelligent Process Mining Software
etl bpmn alignments dashboards petri-net process-mining extract-transform-load workspaces conformance-checking key-performance-indicators causal-net
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Sep 26, 2025 - Kotlin
Software tools to collect Coronavirus sequences and create protein and nucleotide HMMs
bioinformatics alignments bed-files hmms cov coronavirus covid-19 covid covid19 sars-cov-2 covid19-data covid-bioinformatics analyze-coronavirus-sequences
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Feb 8, 2023 - Python
Set of scripts to process HybSeq target enrichment HTS data (on computing grids).
data-science bioinformatics genomics ngs alignments bioinformatics-pipeline data-analysis phylogenomics molecular-biology bioinformatics-analysis bioinformatics-scripts ngs-pipeline hybseq-data species-tree metacentrum paralogs ngs-scripts hybpiper gene-tree hybseq-scripts
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Jun 26, 2026 - Shell
Python code to compute adatper content in reads, kmer content, per-base-GC content (at a specific position in a read alignment, against reference genome), per base NC content (at a specific position in a read alignment against the reference genome), per base seq quality (across aligned reads), per base sequence content, per base quality scores, …
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Oct 19, 2021 - Python
Genome read alignments visualizer
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Oct 24, 2023 - Python
Showcase of parallelization technologies using sequence alignment algorithms
benchmark cmake opencl openmp parallel-computing parallelization showcase alignments smith-waterman needleman-wunsch avx openmp-support sse amd-opencl
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Jan 31, 2017 - C++
The effects of word segmentation quality on word alignments.
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Mar 8, 2022 - Jupyter Notebook
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