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Commits on Feb 24, 2014
Commits on Oct 16, 2013
Commits on Jul 31, 2012
workaround for a problem that seems openjdk specific
Show description for 0c44914committedadding javadoc
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Commits on Jul 23, 2012
PDBWW-4789 entityView is now linked to structure summary page!
Show description for a47a7d2committed
Commits on Jun 15, 2012
now serializable
Show description for 2eb5a4ecommittednow serializable
Show description for 43170a8committed
Commits on May 30, 2012
switching the json library according to request from Olivier Sallou
Show description for be3f49acommitted
Commits on Feb 11, 2012
NCBIQBlastService replaced with the new implementation.
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Commits on Jan 12, 2012
Reversed conditions in if statement so null check was first. Prevents NPE.
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Commits on Jan 9, 2012
Alternate implementation of NCBIQBlastService
Show description for 3e8d89acommitted
Commits on Dec 20, 2011
adding @since 3.0.3 annotations
Show description for cc4a4d5committedAdding a new client for submitting ProteinSequences to the Hmmer3 web service and retrieving Pfam domain annotations
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Commits on Dec 12, 2011
Included some error catching mechanisms into NCBIQBlastService to intercept QBlast's error messages.
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Commits on Dec 8, 2011
Fixing PAM250 default values
Show description for f94a588committedMajor mods in NCBIQBlastAlignmentProperties: it is now responsible for basic sanity checks of these properties instead of NCBIQBlastService. Also added get/set methods for blastp matrix selection a…
Show description for 4e1c0d2committed
Commits on Dec 2, 2011
Adjustments to getBlastFromPOsition and getBlastToPosition
Show description for 114e608committedusing MEGABLAST should now work in setBlastProgram
Show description for 93ed778committedadded getBlastWordSize/setBlastWordSize to use WORD_SIZE values for BLAST requests
Show description for 5c894c6committedadded getBlastExpect/setBlastExpect to use EXPECT values for BLAST requests
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Commits on Aug 30, 2011
Simple comment addition
Show description for 19d2a98committedCommented out code removed, cleaning the mess...
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Commits on May 26, 2011
Commits on Feb 21, 2011
New methods to add getting/setting EXPECT and WORD_SIZE parameters
Show description for 539e2c1committedMore bug fixes: checking for null program or null database now works with new code
Show description for 6f6fd1dcommittedBug fixes
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Commits on Jan 25, 2011
- committed
Improving the code...
Show description for ff5a8a6committedFixing BJ1.7 to BJ3 bugs
Show description for 371dedfcommittedFixing bugs generated from BJ1.7 to BJ3 transitions
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Commits on Jan 24, 2011
Fixing more BJ1.7 to BJ3.0 bugs
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Commits on Jan 11, 2011
Working on removing old legacy BJ dust... Sequence interface used instead of RichSequence. I also included the import requests for DNASequence and ProteinSequence. I need to add the logic related t…
Show description for 2556c4acommittedWorking on removing old legacy BJ dust... Sequence interface used instead of RichSequence
Show description for 36f4be9committed