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Commits on May 13, 2014

• Fix integration tests (#128), which I broke in 3c7315eb

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Commits on May 6, 2014

• Fixed bug: empty strings or very short SG strings should return null

  josemduarte

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Commits on May 2, 2014

• Merge pull request #118 from sbliven/master

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• Fixed bug in latest HEADER parsing change

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  sbliven

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• Fix parsing of SCOP 1.71 (#115)

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  sbliven

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• Be more flexible with parsing short HEADER records.

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• Merge pull request #116 from Elinow/master

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Commits on Apr 30, 2014

• Fixed String vs Character comparisons.

  Elinow

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• Put date formatting/parsing into critical sections.

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Commits on Apr 22, 2014

• Merge branch 'master' of github.com:biojava/biojava

  andreasprlic

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• adding new constructor

  andreasprlic

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• adding IntelliJ config to gitignore

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Commits on Apr 17, 2014

• Improve error messages in AlignmentGui

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  sbliven

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Commits on Apr 4, 2014

• Removing more deprecated methods

  josemduarte

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• Better handling of exceptions in parsers, towards goal #111

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  josemduarte

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• Redoing exception handling in symop parsing, addressing #111

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Commits on Apr 3, 2014

• Fixing test after latest changes

  josemduarte

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• Minor change of interface

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• Another deprecation removed

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• Removing some deprecated methods and fixing docs, goes with #54

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• Making test throw exception if PDB_DIR not set

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• more removal of excessive StructureException #54

  andreasprlic

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• more removal of excessive StructureException #54

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Commits on Apr 2, 2014

• more removal of excessive StructureException #54

  andreasprlic

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• changes required to remove annoying StructureException calls #54

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• changes required to remove annoying StructureException calls #54

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Commits on Mar 29, 2014

• cleaning up docu #110

  andreasprlic

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• fix for #109

  andreasprlic

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• fixing a problem when deserializing XML for list of strings

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• allows to reproduce #109

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• fixing a problem with de-serializing list of strings

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Commits on Mar 27, 2014

• less verbose test

  andreasprlic

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• don't specify tmp file names for AtomCache. It does that automatically. Also: /tmp does not exist on windows.

  andreasprlic

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• don't specify tmp file names for AtomCache. It does that automatically. Also: /tmp does not exist on windows.

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• fixing typo in javadoc

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