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Commits on Feb 28, 2014
Commits on Dec 17, 2013
Commits on Dec 16, 2013
- committed
FractionalSimilarityScorer was actually identical to
Show description for 3d919c4committedRefactored alignment to allow anchored compounds for all global alignments
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Commits on Dec 11, 2013
- committed
- committed
- committed
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Commits on Oct 26, 2013
Stockholm Parser is stateless now (more tolerant but less robust)
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Commits on Oct 16, 2013
Commits on Jul 28, 2013
Made a general-purpose public method
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Commits on Mar 2, 2013
get pariwise alignment of protein sequences
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Commits on Nov 28, 2012
adding another database type constant
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Commits on Nov 27, 2012
Proper fixation of the bug, adding INFINITY as a constant, and documentation
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Commits on Nov 26, 2012
correcting a bug that takes place at the end of the file (if you reach it ;) )
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Commits on Nov 24, 2012
just doc
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Commits on Nov 19, 2012
Changing return of parse() into List in stead of Vector
Show description for 376f82ecommittedAdding getBioSequences(boolean ignoreCase)
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Commits on Nov 9, 2012
for testing of stockholm parser
Show description for 73503bdcommittednew unit test for stockholm file parsing
Show description for 3f87f06committedReplacing System.lineSeparator() calls with the backwards-compatible getProperty("line.separator")
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Commits on Nov 7, 2012
Changing parseFile(xxx) function set into parse(xxx) and adding parseNext(int)
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Commits on Nov 6, 2012
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Added Stockholm Parser beta, and some test files.
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Commits on Oct 18, 2012
Refactor to use forester 1.005
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Commits on Jul 3, 2012
demo for how to load amino acid substitution matrices
Show description for 652cebbcommittedan example for how to align DNA
Show description for ea5b48ccommittedadding the cookbook example as a demo
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Commits on Jul 2, 2012
adding patch by Don Naki
Show description for 466a3a6committed