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Commits on Feb 11, 2012
NCBIQBlastService replaced with the new implementation.
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gediminas
Commits on Jan 12, 2012
Reversed conditions in if statement so null check was first. Prevents NPE.
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Commits on Jan 9, 2012
Alternate implementation of NCBIQBlastService
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Commits on Dec 20, 2011
adding @since 3.0.3 annotations
Show description for 9a733b2committedandreasAdding a new client for submitting ProteinSequences to the Hmmer3 web service and retrieving Pfam domain annotations
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Commits on Dec 12, 2011
Included some error catching mechanisms into NCBIQBlastService to intercept QBlast's error messages.
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Commits on Dec 8, 2011
Fixing PAM250 default values
Show description for 4a0591ecommittedfoisysMajor mods in NCBIQBlastAlignmentProperties: it is now responsible for basic sanity checks of these properties instead of NCBIQBlastService. Also added get/set methods for blastp matrix selection a…
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Commits on Dec 2, 2011
Adjustments to getBlastFromPOsition and getBlastToPosition
Show description for b3d3f28committedfoisysusing MEGABLAST should now work in setBlastProgram
Show description for 4c12c87committedfoisysadded getBlastWordSize/setBlastWordSize to use WORD_SIZE values for BLAST requests
Show description for fc30f10committedfoisysadded getBlastExpect/setBlastExpect to use EXPECT values for BLAST requests
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Commits on Aug 30, 2011
Simple comment addition
Show description for 1ba6a28committedfoisysCommented out code removed, cleaning the mess...
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Commits on May 26, 2011
Commits on Feb 21, 2011
New methods to add getting/setting EXPECT and WORD_SIZE parameters
Show description for 297aa19committedfoisysMore bug fixes: checking for null program or null database now works with new code
Show description for 1dbe91fcommittedfoisysBug fixes
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Commits on Jan 25, 2011
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Improving the code...
Show description for 62aa9b9committedfoisysFixing BJ1.7 to BJ3 bugs
Show description for ad19e52committedfoisysFixing bugs generated from BJ1.7 to BJ3 transitions
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Commits on Jan 24, 2011
Fixing more BJ1.7 to BJ3.0 bugs
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Commits on Jan 11, 2011
Working on removing old legacy BJ dust... Sequence interface used instead of RichSequence. I also included the import requests for DNASequence and ProteinSequence. I need to add the logic related t…
Show description for 29f1325committedfoisysWorking on removing old legacy BJ dust... Sequence interface used instead of RichSequence
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Commits on Sep 30, 2010
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Correcting a "==" inequality, using Arrays' searchBinary() method instead.
Show description for 4843dbfcommittedfoisysVarious fixing to match biojava3 usage: removing usage of BioException
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Commits on Jul 14, 2010
Fixing legacy package information
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Commits on Jul 6, 2010
First commit of basic file/folder structure for the biojava2-ws module, a module to link Biojava objects to various web resources for processing
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