Commits
Branch selector
User selector
Commit history
Commits on Jul 13, 2012
- committed
Commits on Jun 6, 2012
Commits on May 18, 2012
https://redmine.open-bio.org/issues/3355 fix for this issue
Show description for 35f9796committed
andreashttps://redmine.open-bio.org/issues/3355 junit test for this ticket
Show description for c6fec8dcommittedandreas
Commits on May 15, 2012
fix according to S Darnell and P Troshin
Show description for 30c2e7dcommittedandreasfix according to S Darnell and P Troshin
Show description for c56b33ecommittedandreas- committedkohchuanhock
Removed line 460-462 of PeptidePropertiesImpl.java which caused getNetCharge of Innovagen to return 0.0 if the net charge excluding the n-terminal and c-terminal are 0.0 regardless of the charge of…
Show description for 6ac6922committedkohchuanhockhttps://redmine.open-bio.org/issues/3351 adding missing standard chem comp groups
Show description for 7280dbecommittedandreas
Commits on May 12, 2012
Extended getNetCharge to include the ability to find net charge at user given pH point (suggested by Steve Darnell)
Show description for a2e32e6committedkohchuanhock
Commits on May 7, 2012
new request to fetch all representative domain names from remote
Show description for 3d82526committedandreasjust some small cleanup
Show description for 49dd685committedandreasnow supports changing the SCOP download location
Show description for eec660acommittedandreasnow with support for accessing the latest scop update from Berkeley
Show description for 654edadcommittedandreas
Commits on May 3, 2012
no need to force init of domainProvider, unless actually requested.
Show description for 167de00committedandreasnow correctly setting the structure name. This broke the XML export...
Show description for f8bccf3committedandreas
Commits on May 1, 2012
add an interface for PDP domain providers. (so we can have multiple implementations of this, not only the remote one)
Show description for 36168b4committedandreasadd an interface for PDP domain providers. (so we can have multiple implementations of this, not only the remote one)
Show description for 12bbd96committedandreasnow serializable
Show description for 177d64ecommittedandreas
Commits on Apr 30, 2012
default color is green not black
Show description for 0484d33committedandreas
Commits on Apr 25, 2012
pdpprovider is now a protected field
Show description for f9341f7committedandreasallowing CECP to be called from command line
Show description for f55b605committedandreas
Commits on Apr 20, 2012
new junit test for correct parsing of RNA/nucleotides
Show description for 2666325committedandreas
Commits on Apr 18, 2012
Modifications to support crystallographic information.
Show description for b90dfa3authored andcommittedModifications to support crystallographic information.
Show description for 3358181authored andcommittedModifications to support crystallographic information.
Show description for 573157eauthored andcommittedNew class to hold crystallographic information.
Show description for b14b141authored andcommitted
Commits on Apr 7, 2012
Fixed the bug of calling getIsoelectricPoint instead of getNetCharge when it should be calling getNetCharge. A careless mistake.
Show description for 6d2a5f1committedkohchuanhock
Commits on Mar 29, 2012
enhanced test
Show description for 0e05e0bcommittedandreasjunit test for https://redmine.open-bio.org/issues/3334
Show description for daa3559committedandreasfix for https://redmine.open-bio.org/issues/3334
Show description for e3cb7c2committedandreas
Commits on Mar 28, 2012
Added DemoAlignmentFromFasta, to show how to read a structural alignment from a fasta file.
Show description for 0565724committedblivensRemoving debugging output.
Show description for 8176024committedblivensAdded AlignmentTools.createAFPChain, which makes an AFPChain from a list of aligned ResidueNumbers.
Show description for 49c4a0ccommittedblivensjavadoc fixes, incorrect @param --> @throws
Show description for a02c91ecommittedheuermh