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Commits on Jul 13, 2012
- committed
Commits on Jun 6, 2012
Commits on May 18, 2012
https://redmine.open-bio.org/issues/3355 fix for this issue
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andreashttps://redmine.open-bio.org/issues/3355 junit test for this ticket
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andreas
Commits on May 15, 2012
fix according to S Darnell and P Troshin
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andreasfix according to S Darnell and P Troshin
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andreas- committed
kohchuanhock Removed line 460-462 of PeptidePropertiesImpl.java which caused getNetCharge of Innovagen to return 0.0 if the net charge excluding the n-terminal and c-terminal are 0.0 regardless of the charge of…
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kohchuanhockhttps://redmine.open-bio.org/issues/3351 adding missing standard chem comp groups
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andreas
Commits on May 12, 2012
Extended getNetCharge to include the ability to find net charge at user given pH point (suggested by Steve Darnell)
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kohchuanhock
Commits on May 7, 2012
new request to fetch all representative domain names from remote
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andreasjust some small cleanup
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andreasnow supports changing the SCOP download location
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andreasnow with support for accessing the latest scop update from Berkeley
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andreas
Commits on May 3, 2012
no need to force init of domainProvider, unless actually requested.
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andreasnow correctly setting the structure name. This broke the XML export...
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andreas
Commits on May 1, 2012
add an interface for PDP domain providers. (so we can have multiple implementations of this, not only the remote one)
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andreasadd an interface for PDP domain providers. (so we can have multiple implementations of this, not only the remote one)
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andreasnow serializable
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andreas
Commits on Apr 30, 2012
default color is green not black
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andreas
Commits on Apr 25, 2012
pdpprovider is now a protected field
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andreasallowing CECP to be called from command line
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andreas
Commits on Apr 20, 2012
new junit test for correct parsing of RNA/nucleotides
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andreas
Commits on Apr 18, 2012
Modifications to support crystallographic information.
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Modifications to support crystallographic information.
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Modifications to support crystallographic information.
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New class to hold crystallographic information.
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Commits on Apr 7, 2012
Fixed the bug of calling getIsoelectricPoint instead of getNetCharge when it should be calling getNetCharge. A careless mistake.
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kohchuanhock
Commits on Mar 29, 2012
enhanced test
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andreasjunit test for https://redmine.open-bio.org/issues/3334
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andreasfix for https://redmine.open-bio.org/issues/3334
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andreas
Commits on Mar 28, 2012
Added DemoAlignmentFromFasta, to show how to read a structural alignment from a fasta file.
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blivensRemoving debugging output.
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blivensAdded AlignmentTools.createAFPChain, which makes an AFPChain from a list of aligned ResidueNumbers.
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blivensjavadoc fixes, incorrect @param --> @throws
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heuermh