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Commits on May 18, 2012
https://redmine.open-bio.org/issues/3355 fix for this issue
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andreashttps://redmine.open-bio.org/issues/3355 junit test for this ticket
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andreas
Commits on May 15, 2012
https://redmine.open-bio.org/issues/3351 adding missing standard chem comp groups
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andreas
Commits on May 7, 2012
new request to fetch all representative domain names from remote
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andreasjust some small cleanup
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andreasnow supports changing the SCOP download location
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andreasnow with support for accessing the latest scop update from Berkeley
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andreas
Commits on May 3, 2012
no need to force init of domainProvider, unless actually requested.
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andreas
Commits on May 1, 2012
add an interface for PDP domain providers. (so we can have multiple implementations of this, not only the remote one)
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andreasadd an interface for PDP domain providers. (so we can have multiple implementations of this, not only the remote one)
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andreasnow serializable
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andreas
Commits on Apr 25, 2012
pdpprovider is now a protected field
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andreasallowing CECP to be called from command line
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andreas
Commits on Apr 20, 2012
new junit test for correct parsing of RNA/nucleotides
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andreas
Commits on Apr 18, 2012
Modifications to support crystallographic information.
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Modifications to support crystallographic information.
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Modifications to support crystallographic information.
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New class to hold crystallographic information.
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Commits on Mar 29, 2012
enhanced test
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andreasjunit test for https://redmine.open-bio.org/issues/3334
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andreasfix for https://redmine.open-bio.org/issues/3334
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andreas
Commits on Mar 28, 2012
Removing debugging output.
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blivensAdded AlignmentTools.createAFPChain, which makes an AFPChain from a list of aligned ResidueNumbers.
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blivens
Commits on Mar 27, 2012
Added StructureSequenceMatcher, which matches sequences to structures.
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blivens
Commits on Mar 16, 2012
[maven-release-plugin] prepare for next development iteration
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andreas[maven-release-plugin] prepare release biojava-3.0.3
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andreas
Commits on Mar 7, 2012
Improved documentation
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blivensAdded CECP test for short CECP alignments
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blivensUpdating PDBFIleParser test to new Element symbol in toPDB method
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andreasconverting ELement R to X
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andreasBugfix: Short alignment blocks (<5 residues) will be ignored by CECP
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blivensadding Element name toPDB method
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andreasparser now ignores empty lines
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andreas
Commits on Feb 28, 2012
adding more details for SIFTs
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andreasfixing some details about sifts parsing
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andreas