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Commits on May 18, 2012
https://redmine.open-bio.org/issues/3355 fix for this issue
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andreashttps://redmine.open-bio.org/issues/3355 junit test for this ticket
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Commits on May 15, 2012
https://redmine.open-bio.org/issues/3351 adding missing standard chem comp groups
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Commits on May 7, 2012
new request to fetch all representative domain names from remote
Show description for 3d82526committedandreasjust some small cleanup
Show description for 49dd685committedandreasnow supports changing the SCOP download location
Show description for eec660acommittedandreasnow with support for accessing the latest scop update from Berkeley
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Commits on May 3, 2012
no need to force init of domainProvider, unless actually requested.
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Commits on May 1, 2012
add an interface for PDP domain providers. (so we can have multiple implementations of this, not only the remote one)
Show description for 36168b4committedandreasadd an interface for PDP domain providers. (so we can have multiple implementations of this, not only the remote one)
Show description for 12bbd96committedandreasnow serializable
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Commits on Apr 25, 2012
pdpprovider is now a protected field
Show description for f9341f7committedandreasallowing CECP to be called from command line
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Commits on Apr 20, 2012
new junit test for correct parsing of RNA/nucleotides
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Commits on Apr 18, 2012
Modifications to support crystallographic information.
Show description for b90dfa3authored andcommittedModifications to support crystallographic information.
Show description for 3358181authored andcommittedModifications to support crystallographic information.
Show description for 573157eauthored andcommittedNew class to hold crystallographic information.
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Commits on Mar 29, 2012
enhanced test
Show description for 0e05e0bcommittedandreasjunit test for https://redmine.open-bio.org/issues/3334
Show description for daa3559committedandreasfix for https://redmine.open-bio.org/issues/3334
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Commits on Mar 28, 2012
Removing debugging output.
Show description for 8176024committedblivensAdded AlignmentTools.createAFPChain, which makes an AFPChain from a list of aligned ResidueNumbers.
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Commits on Mar 27, 2012
Added StructureSequenceMatcher, which matches sequences to structures.
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Commits on Mar 16, 2012
[maven-release-plugin] prepare for next development iteration
Show description for 79ed1fdcommittedandreas[maven-release-plugin] prepare release biojava-3.0.3
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Commits on Mar 7, 2012
Improved documentation
Show description for 676a632committedblivensAdded CECP test for short CECP alignments
Show description for 0ec6532committedblivensUpdating PDBFIleParser test to new Element symbol in toPDB method
Show description for fb1c80dcommittedandreasconverting ELement R to X
Show description for 355ef97committedandreasBugfix: Short alignment blocks (<5 residues) will be ignored by CECP
Show description for 82d39c0committedblivensadding Element name toPDB method
Show description for ce651b6committedandreasparser now ignores empty lines
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Commits on Feb 28, 2012
adding more details for SIFTs
Show description for 9d063e5committedandreasfixing some details about sifts parsing
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