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2
votes
1
answer
84
views
1
answer
Search Transcripts with Amino Acid
ensembl amino-acid protein transcript written 9 hours ago by immy123 • 0 • updated 5 hours ago by LLTommy • 930
6
votes
2
answers
223
views
8 follow
2
answers
GO enrichment analysis with human ENSEMBL ids
R ensembl go enrichment edger rna-seq written 6 weeks ago by zhang.jianhai • 0 • updated 1 day ago by Nan Xiao • 0
2
votes
1
answer
327
views
1
answer
How to retrieve COSMIC variations using Ensembl REST API?
ensembl api variation cosmic written 6 months ago by patrick.durand • 110 • updated 7 days ago by Biostar ♦♦ 20
0
votes
0
answers
78
views
0
answers
stable_id by external gene name
ensembl stable_id written 8 days ago by mahmood.nt • 0
0
votes
1
answer
88
views
1
answer
Designating regulatory region threshold
gene ensembl regulation variation promoter written 11 days ago by johntimcham • 0 • updated 10 days ago by Emily_Ensembl ♦ 11k
0
votes
0
answers
131
views
0
answers
Retrieving homologues of human proteins using Ensembl REST API?
orthologs ensembl written 19 days ago by db534 • 0
6
votes
2
answers
1.3k
views
2
answers
Confused with Ensembl Exon ID, How to understand them?
exon id ensembl exon written 2.1 years ago by Yu • 90 • updated 21 days ago by gandrescabrera • 70
4
votes
1
answer
148
views
1
answer
problem with downloading files
ensembl rsync written 24 days ago by elisheva • 70 • updated 22 days ago by Magali_Ensembl • 130
0
votes
0
answers
114
views
0
answers
SNP Proxy dataset
genome ensembl hapmap snp written 23 days ago by robust1308 • 0
11
votes
4
answers
168
views
7 follow
4
answers
Ensembl ID differences between assemblies?
ensembl written 25 days ago by jiab • 10 • updated 24 days ago by crisime • 180
0
votes
1
answer
118
views
1
answer
Map gene IDs to gene names
gene R ensembl geneid written 24 days ago by bisansamara • 0 • updated 24 days ago by EagleEye • 4.2k
4
votes
2
answers
125
views
2
answers
How to filter mutant allele frequency in Variant Effect Predictor (VEP)?
perl vcf vep ensembl written 25 days ago by kin182 • 0 • updated 24 days ago by EnsemblWill • 500
3
votes
2
answers
675
views
2
answers
ENSEMBL Transcript_Accession ID conversion
ensembl sleuth kallisto rna-seq written 15 months ago by dinindu.senanayake • 0 • updated 28 days ago by WouterDeCoster ♦ 19k
10
votes
1
answer
517
views
1
answer
Which source of annotation files to use, Ensembl or UCSC?
ensembl rna-seq ucsc written 11 months ago by epigene • 360 • updated 4 weeks ago by Emily_Ensembl ♦ 11k
0
votes
1
answer
183
views
1
answer
biomaRt getSequence() connection time-out
R upstream sequence ensembl written 4 weeks ago by flaviuvadan • 0 • updated 4 weeks ago by Ben_Ensembl • 280
5
votes
2
answers
105
views
2
answers
Finding homozygotes with SNP of interest
ensembl homozygote snp written 5 weeks ago by andrey.v.shubin • 40 • updated 5 weeks ago by Emily_Ensembl ♦ 11k
2
votes
0
answers
162
views
0
answers
NCBI vs ENSEMBL FASTA
genome fasta sequence refseq ensembl written 5 weeks ago by uki_al • 20
1
vote
1
answer
90
views
1
answer
Should ENSG IDs be annotated with the same patch as for the counts or with the latest release?
ensembl biomart rna-seq annotation written 5 weeks ago by lm687 • 30 • updated 5 weeks ago by kennethcondon2007 • 810
7
votes
2
answers
197
views
2
answers
NCBI vs Ensembl - which one to chose - for downloading protein fasta files
fasta ncbi blast ensembl written 5 weeks ago by Idit • 0 • updated 5 weeks ago by Jean-Karim Heriche ♦ 11k
2
votes
1
answer
1.6k
views
1
answer
Can One Use The Ensembl Api To Retrieve Multiple Alignment Between The 46 Vertebrate Species
ensembl alignment coordinates written 5.0 years ago by bingyu19821270 • 40 • updated 6 weeks ago by Biostar ♦♦ 20
2
votes
1
answer
153
views
1
answer
why there are different ensembl exon IDs for exactly same chromosome coordinates
gene bioinformatics next-gen exon ensembl written 6 weeks ago by sandybioteck • 10 • updated 6 weeks ago by theobroma22 • 750
8
votes
2
answers
710
views
2
answers
Job: Lots of jobs at Ensembl - now with another job added
ensembl web outreach job annotation written 10 weeks ago by Emily_Ensembl ♦ 11k
1
vote
1
answer
124
views
1
answer
Bulky collection of the orthologs and paralogs data from Ensembl
orthologs ensembl paralogs written 7 weeks ago by wangdp123 • 60
25
votes
4
answers
4.0k
views
10 follow
4
answers
Ucsc/Ensembl Bam Converter?
ensembl bam reference ucsc written 6.0 years ago by 2184687-1231-83- • 4.8k • updated 7 weeks ago by balwierz • 10
6
votes
2
answers
199
views
5 follow
2
answers
Two Ensembl Transcript Ids seem swapped with respect to AA sequence in different genome builds
genome assembly sequence gene ensembl written 8 weeks ago by mtscales • 10 • updated 7 weeks ago by Magali_Ensembl • 130
2
votes
3
answers
201
views
3
answers
Explanation of ENSEMBL GTF features
gtf ensembl annotation written 8 weeks ago by b.nota • 3.5k
3
votes
2
answers
258
views
2
answers
Using Ensembl ID History Converter on GRCh37 Transcripts for salmon
ensembl grch37 salmon rna-seq written 9 weeks ago by stefanos.bamopoulos • 30 • updated 8 weeks ago by Magali_Ensembl • 130
3
votes
0
answers
148
views
0
answers
Forum: Survey for VEP users
ensembl survey variation vep forum written 8 weeks ago by Emily_Ensembl ♦ 11k
7
votes
3
answers
2.0k
views
3
answers
Genome Reference For Bam Files In Ensembl Vs Ucsc?
next-gen sequencing reference ensembl bam ucsc written 6.1 years ago by 2184687-1231-83- • 4.8k • updated 9 weeks ago by Biostar ♦♦ 20
7
votes
1
answer
232
views
1
answer
Convert fasta to bed (no gtf available)
genome ensembl bed cds fasta written 10 weeks ago by bioinfo8 • 70
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