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1000genomes: choosing the best annotation from multiple transcripts
genome snp written 23 hours ago by spiral01 • 60 • updated 21 hours ago by Sergey Naumenko • 140
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Remapping SNPs to new genome build (bovine/porcine)
genome mappging snp written 21 hours ago by Barry Simpson • 0
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Variant calling and downstream analysis
next-gen snp written 1 day ago by arash.iranzadeh1980 • 0 • updated 1 day ago by Brian Bushnell ♦ 12k
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Annotation of GWAS results with GTEx
gwas snp eqtl gtex written 1 day ago by LNA • 0
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Feasible Annotation of 4 million unique SNPs
gatk ase snp written 2 days ago by serpalma.v • 10 • updated 1 day ago by Emily_Ensembl ♦ 11k
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Question about run cnvkit on DNAnexus
cnvkit snp dnanexus written 5 weeks ago by qyang • 20 • updated 1 day ago by Eric T. • 1.7k
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SNPeff method-no reference genome
genome next-gen snp written 1 day ago by Barby • 20
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Phasing alleles, indel gap filled with reference.
allele alignment samtools phasing snp written 2 days ago by Vincent Manzanilla • 0
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Summary statistics in SNPTEST for a single SNP
snp written 2 days ago by magda.meier • 0
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5 follow
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SNPs Calling Tools
variant calling alignment snp rna-seq written 4 months ago by dd.catania • 0 • updated 2 days ago by colindaven • 220
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About the reads aligned 0 times (around 10%) in Bowtie2.
chip-seq snp written 2 days ago by ghostforever.shi • 10 • updated 2 days ago by Philipp Bayer ♦ 4.5k
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SNP array liftover data with p values
p value snp liftover written 19 months ago by nuketbilgen • 30 • updated 2 days ago by Biostar ♦♦ 20
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How to compare a tumour sample to multiple normal samples in Freebayes
genome next-gen snp written 5 days ago by fugu • 30
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Confusing allele notation for SNP data
snp written 3 days ago by magda.meier • 0
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Group mutations in SNP data
genome snp written 4 days ago by fugu • 30
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Retrieving identical positions from mpileup file
alignment tutorials snp written 3 days ago by samocarp • 0 • updated 3 days ago by Samuel Brady • 100
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Using long reads to find a combination of mutations
long reads nanopore snp variants written 4 days ago by eayasi • 0
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How to find strain specific truncated genes?
genome gene next-gen snp alignment written 21 months ago by mmart12 • 20 • updated 4 days ago by Biostar ♦♦ 20
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110
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1
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No T base in the Illumina report file
array illumina snp written 5 days ago by nehal1610.ranabhatt • 0 • updated 5 days ago by Istvan Albert ♦♦ 72k
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Exclude reads soft-clipped > N bases in Freebayes
next-gen snp written 5 days ago by fugu • 30 • updated 5 days ago by Istvan Albert ♦♦ 72k
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Where can I download whole genome sequencing data and variant calling result of Lung cancer genome?
snp written 9 days ago by lamnvcnsh • 0 • updated 5 days ago by Biostar ♦♦ 20
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SnpEff, Exome Sequencing, Variant Annotation
next-gen snp sequencing written 5 days ago by avinashdhar123 • 0
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161
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How to filter mutect2 VCF output?
gatk alignment snp mutect2 written 15 days ago by Whoknows • 570 • updated 5 days ago by poisonAlien • 2.3k
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Finding more information about a homozygote of interest
snp written 5 days ago by andrey.v.shubin • 40
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111
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Error when changing the database for minfi dropLociWithSnps
methylationepic minfi illumina snp methylation written 5 days ago by Ellen O • 0
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how to analyze CNV "copy number variation" data
gene R snp written 6 days ago by mms140130 • 50
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Job: BIOINFORMATICIAN I at Brigham and Women's Hospital, Boston, USA
gwas R job snp rna-seq written 9 days ago by IV • 1.1k
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Best approach to quantify specific bacteria strain
sequence alignment qpcr snp written 8 days ago by CY • 20
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snpEff genome database build problem: no snpEffectorPredit
snp written 9 days ago by HannahT • 0 • updated 9 days ago by Pierre Lindenbaum ♦ 95k
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How to analyse GWAS data for co-morbid disorders?
pleiotropy gwas statistical genetics snp R written 9 days ago by Veera • 60
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