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Commits on Dec 12, 2017

Merge pull request #716 from josemduarte/chainTransformAltlocs
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Commits on Dec 9, 2017

Recursive transform for group
josemduarte
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e0c031b
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Commits on Dec 8, 2017

Fixes for translate functions, similar to #715
josemduarte
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8a7e22c
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Fixing also Calc.transform(Structure,Matrix4d)
josemduarte
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3a1ad26
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Commits on Dec 7, 2017

Fix and unit test for #715
josemduarte
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bc9011a
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New demo for mmcif to pdb conversion
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f596afb
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Commits on Nov 16, 2017

Better logging
josemduarte
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2898281
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Removing almost all warnings in structure module, some logging changes
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bb14709
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Commits on Oct 26, 2017

Minor bugfix and some new tests for it
josemduarte
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47ab723
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Commits on Oct 18, 2017

[maven-release-plugin] prepare for next development iteration
josemduarte
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a7216ef
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[maven-release-plugin] prepare release biojava-5.0.0-alpha13
josemduarte
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0c96f96
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[maven-release-plugin] prepare for next development iteration
josemduarte
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3de5254
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[maven-release-plugin] prepare release biojava-5.0.0-alpha13
josemduarte
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52e6a05
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[maven-release-plugin] prepare for next development iteration
josemduarte
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e375195
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[maven-release-plugin] prepare release biojava-5.0.0-alpha13
josemduarte
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8b05a31
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Merge pull request #706 from josemduarte/issue704
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Commits on Oct 17, 2017

ignore chains that do not have representative atoms, e.g. 4LKE chain G.
valasatava
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5a4dce6
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Commits on Oct 16, 2017

Merge pull request #710 from josemduarte/issue708
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Commits on Oct 11, 2017

Now identical clustering performed on 95% identical sequences
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730d6b4
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Commits on Oct 10, 2017

Better fix for null subunits as advised by @lafita
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96c6816
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Commits on Oct 9, 2017

A fix for #708
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276e5cc
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Small fix for cloning
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b2555f6
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Commits on Oct 7, 2017

several fixes for biological assemblies calculations
valasatava
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b81c37d
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Commits on Oct 5, 2017

A new dome for quat symmetry detection
josemduarte
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8856006
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Commits on Oct 4, 2017

New bioassembly demo
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d6c1fb3
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Commits on Sep 8, 2017

Making it clear that the soft memory cache is a singleton
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2b1860b
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Fix for new tests so that they don't pollute other tests
josemduarte
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83b9c09
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Solving #704 and adding some tests for #703
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3123589
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Fixing phosphosite urls and changing default url timeout to 30s
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67ca7f2
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Commits on Aug 9, 2017

fixed minor issue with lack of this keyword, re-ran tests
luke czapla
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9a38510
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made max values non-static and created final DEFAULT constants
luke czapla
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361a023
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Renamed MaxStagger (etc.) to maxStagger (etc.)
luke czapla
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0d0ed55
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Subclasses not serializable
luke czapla
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d8a0843
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Commits on Aug 6, 2017

Structure object unmarked as transient for serialization
luke czapla
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8fff10f
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Commits on Aug 5, 2017

Merge remote-tracking branch 'upstream/master'
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luke czapla
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