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Pull requests: vgteam/vg
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Force manpage to have all non-deprecated subcommands
#4979
opened Jul 25, 2026 by
faithokamoto
Contributor
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Teach vg call to do overlays for non-ref HAPLOTYPE paths, if we ask
#4978
opened Jul 23, 2026 by
faithokamoto
Contributor
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Promote secondary when primary alignment fails to surject
#4973
opened Jul 20, 2026 by
gaoj66-roche
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Allow long-read Giraffe to take self-loops/reversals between seeds
#4953
opened Jul 1, 2026 by
faithokamoto
Contributor
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Use vg WDL that gives RTG a defined memory limit
#4918
opened May 29, 2026 by
adamnovak
Member
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Add
--reference-bonus to bias surjection towards reference paths
#4786
opened Jan 5, 2026 by
JosephLalli
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Draft
[WIP] add tag for allele number to call output
#4665
opened Jul 23, 2025 by
glennhickey
Contributor
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Keep haplotypes in
vg chunk that don't extend far enough
#4501
opened Jan 21, 2025 by
adamnovak
Member
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ProTip!
Updated in the last three days: updated:>2026-07-23.