Tabix.io UI
Query sequence data (VCF/BCF1/BCF2, Tabix, BGEN, PLINK) in R
docker-compose for tabix, clickhouse-server and mariadb
Sample Clickhouse cluster deployment with chproxy
A nodejs-based service for requests for tabix-indexed genomic data
GQuery is a software tool for rapidly querying large numbers of bgzip compressed, tabix indexed genomic data files e.g. vcf, maf, bed, bedGraph, etc. from multiple species with different genome builds without the need to develop, debug, and maintain custom file parsers. Search for particular germline or somatic mutations, copy number changes, di…
Community builds for the main bioinformatics software - Samtools, Tabix, Bcftools, CD-HIT
MCP Connector for VCF Genetic Data File(s). Single, multiple, comparison, data setting, etc.
Historical archive: old tabix fork for Windows support for pysam-era workflows. Not maintained; use upstream htslib.
Works completed within the SQL module of the Data Analyst course on the Karpov Courses platform
Bitemporal evidence timeline for reported genetic variants: reconstructs what ClinVar asserted on any past date and reports what has moved since. Range-queried ingest, multi-tenant isolation enforced by an AST guard, tamper-evident review ledger. Research use only.
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