Genome assembly quality assessment using QUAST

🦇🧫📊Study on bat gut shotgun metagenomics

Run multiple metagenome filtering programs using Docker containers

Docker container for W2RAP based on CentOS

QUAST assembly assessment using a reference genome.

reproducible Snakemake pipeline for bacterial hybrid assembly.

Reusable comparative bacterial genomics pipeline for assembled bacterial genome FASTA files using QUAST, Bakta, FastANI, Panaroo, and FastTree.

Automated Bash pipeline for hybrid de novo bacterial genome assembly, combining Oxford Nanopore (ONT) and Illumina reads with QC, polishing (POLCA), and evaluation (QUAST).

CompGen Labs

A modular, reproducible, and automated Bash pipeline for bacterial isolate whole-genome sequencing analysis from Illumina paired-end reads, including quality control, taxonomic classification, genome assembly, genome characterization, and coverage estimation.

Reusable bacterial genome analysis pipeline for paired-end FASTQ data using FastQC, fastp, SPAdes, QUAST, Prokka, and MultiQC.

[a.a. 24/25] C. Coscarelli, M. Santoriello

The repository contains a comprehensive pipeline for genome assembly and quality assessment, designed for genomic data analysis. It integrates various bioinformatics tools for accurate genome assembly.