the hierfstat package

Diallel analysis of carrot phenotypes

Testing pleiotropy vs. separate QTL in multiparental populations

Quantitative and population genetics analyses of populations, pools, half-sib/full-sib families, and polyploids

My Code Collection

List of papers related to Agricultural Statistics, Plant Breeding, and Quantitative Genetics

Repository for population genetics and quantitative genetics metrics implementarion and visualization

Trait Analysis by aSSociation, Evolution and Linkage

Fit a dyadic mixed model to pedigree data estimating (co)variance components and genetic parameters

O objetivo do presente projeto é propor e avaliar o uso da regularização no desempenho de RNAs em modelos de predição genômica (GP). Tal estudo visa melhorar a predição de valores genéticos genômicos (GEBV), evitando o chamado o problema de ‘overfitting’, e estimação de parâmetros genéticos. Para isso, dados simulados e reais serão utilizados.

This repository contains data and code to reproduce analysis in the manuscript, "A mutation in Themis contributes to peanut-induced oral anaphylaxis in CC027 mice"

R package for average evolvability measures

Version controlled, editable source for the genetic group 'How To': Wolak & Reid (2017) Journal of Animal Ecology, Appendix S6

Supplementary code and data for "The paradox of predictability"

Pipeline for comparative transcriptomics across species

A field experiment assessing the adaptive capacity of a wild plant population (Brassica rapa) to expected warming

Code and analysis pipeline for the paper "Genomic Prediction through Machine Learning and Neural Networks for Traits with Epistasis" (Comput Struct Biotechnol J, 2022).

quangpy: a python package for quantitative genetics analysis

Analysing patterns of phenotypic adaptation across timescales and lineages