MMseqs2: ultra fast and sensitive search and clustering suite
MMseqs2 app to run on your workstation or servers
Pipeline for searching and aligning contact maps for proteins, then running DeepFri's GCN.
Sequence clustering and database creation using mmseqs, from local fasta files
Pipeline for searching and aligning contact maps for proteins, then running DeepFri's GCN. This repository is for portfolio purposes only. For currently maintained version go to Małopolskie Centrum Biotechnologii repository - https://github.com/bioinf-mcb/Metagenomic-DeepFRI
Representative sequence selection for large bioinformatics datasets
blastadmin is a command wrapper which enables users to run multiple similarity search software in a same interface.
Automated maximum-likelihood phylogeny pipeline for viral families. Discovers species via NCBI Taxonomy, downloads from GenBank, aligns with MAFFT, builds trees with FastTree (broad) and IQ-TREE (refined), and annotates internal nodes by LCA. Supports multi-marker concatenation for large DNA virus families.
Add a description, image, and links to the mmseqs topic page so that developers can more easily learn about it.
To associate your repository with the mmseqs topic, visit your repo's landing page and select "manage topics."