Visualize and annotate genomic coverage with ggplot2

🦀 Fqkit: A simple and cross-platform program for fastq file manipulation

This is one of my first python scripts for a simple web-based tool that will generate basic information from the query DNA sequence.

HMM for annotating coding regions of DNA in S. cerevisiae chromosome III

Bioinformatics library

Computes gc contents in prokaryotic genomes

Beginner-friendly Jupyter tool to compute GC% and sliding-window profiles for DNA sequences.

My solutions for rosalind problems

Analysis on 5'UTRs based on sequence.

Computational toolkit for DNA sequence analysis.

A simple Streamlit app to calculate DNA GC content 🧬

Python tool to compute GC content for DNA sequences, export results to CSV, and visualize them through simple bar plots.

Sliding window program to compute the %GC in sequence of nucleotides.

a Python program to calculate GC content from fasta file

[Python] Tool for calculating GC content of nucleotide sequences with optional sliding window analysis. Sequence input options include strings and the following file formats: FASTA, FASTA Nucleid Acid, GenBank, Aligned FASTA and ClustalW.

A simple Streamlit app to calculate DNA GC content 🧬

Benchmark: Mojo 0.26 vs Python 3.10 for FASTA GC content calculation - 6.7x speedup

Bioinformatics end-semester project using k-mer and GC-content features with K-Means clustering to identify candidate functional non-coding RNA patterns from genomic sequence data, with miRNA-based comparative analysis.

A repository for my 2020-2021 AP Research project.

Python-based DNA Sequence Analyzer for validating DNA sequences, calculating GC content, generating reverse complements, reading FASTA files, and creating analysis reports.