Simulate the C. Elegans worm brain in your browser and interact with the worm as it moves around

Graph theory analysis of brain MRI data

micapipe from the Multimodal imaging and connectome analysis lab (http://mica-mni.github.io) at the Montreal Neurological Institute. Read The Docs documentation below

Python library for analysis of neuroanatomical data.

A dynamic connectome mapping module in python.

STAGIN: Spatio-Temporal Attention Graph Isomorphism Network

A performant, powerful query framework to search for network motifs

Connectome Mapper 3 is a BIDS App that implements full anatomical, diffusion, resting/state functional MRI, and recently EEG processing pipelines, from raw T1 / DWI / BOLD , and preprocessed EEG data to multi-resolution brain parcellation with corresponding connection matrices.

Compose chunk operators to create a pipeline for local or distributed petabyte-scale computation

A unified framework for skeletonization, morphological analysis, and connectivity analysis.

Emergent behaviour and neural dynamics in artificial agents tracking odour plumes

Please use the new version of LiFE: www.github.com/brain-life/encode

A prediction-based extension of network-based statistics.

A Hugo theme with backlinks for online communities

Embodied Drosophila: 138,639-neuron whole-brain connectome simulation (FlyWire v783) in a biomechanical body (NeuroMechFly v2 / MuJoCo). Vision, olfaction, gustation, flight, and emergent behaviors — all from the real connectome.

Tools to work with the FlyWire connectome. Fully interoperable with navis.

A multipurpose matlab-based MEG/EEG overlay & network plotter

Fast and memory efficient approach for connectome-wide association studies in R and C++. Uses custom implementation of multivariate distance matrix regression to associate brain and behavior.

An Explainable Geometric-Weighted Graph Attention Network (xGW-GAT) for Identifying Functional Networks Associated with Gait Impairment

GNN with summarization/grouping layer for speed and interpretability