A comprehensive suite of Python programs for 1- & 2-photon calcium imaging analysis. Best to use on a local server, with a GPU for faster processing and data stored on drive(s) separate from the root mount.

Documentation: https://thicclatka.github.io/CLAH_IA

CLAH Image Analysis provides tools for:

• 1- and 2-photon imaging analysis
• Motion correction and segmentation
• Cell registration
• Unit analysis

• Installation Guide
• Order of Operations
• Structure for path names
• CLIs
• GUIs

• Flesh out start up & set up scripts
• Add GUI/WA details to Documentation
• Change segDict_WA to FastAPI + typescript from streamlit
• Create docker file