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@stajichlab

Jason Stajich Lab at UC Riverside

Evolutionary Genomics of Fungi projects, data and software
README.md

These repositories for the Stajich laboratory at UC Riverside focused on Genomics, Bioinformatics, Evolution of (mostly) Fungi and Microbes.

https://lab.stajich.org

See our Standard Operating Procedures are (in progress) documentation on procedures and onboarding.

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  1. Phyling Phyling Public

    Phyling: phylogenetic inference from annotated genomes

    Python 33 4

  2. AAFTF AAFTF Public

    Automatic Assembly For The Fungi

    Python 27 6

  3. SOP_data SOP_data Public

    Standard Operating Procedures

    1

  4. funannotate_template funannotate_template Public template

    Project template for doing a funannotate annotation set

    Shell 3 1

  5. PopGenomics_template PopGenomics_template Public template

    Template for Population Genomics variant calling

    Shell 3 3

  6. Comparative_pipeline Comparative_pipeline Public

    Comparative genomics pipeline

    Perl 11 6

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