Tags: sequana/hic
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Release 0.2.0: fix Hi-C QC report rendering and pipeline improvements - Fix per-sample QC report showing raw Markdown instead of HTML: the report template opened with a block-level <center> tag, which made python-markdown skip conversion of all enclosed content. Enable the md_in_html extension and add markdown="1" to the wrapping block tags. - Add table styling to the QC report CSS (collapsed borders, padded cells, dark header row). - bwa_split: replace 32-bit seqkit split2 (crashes on large inputs) with sequana fastq-split; use -5SP -M bwa options and split_fasta container. - Add qc3c report to pipeline targets for both chromap and bwa paths. - Bump version to 0.2.0, set status to Production, update changelog. - Expand test suite with lightweight setup/config-validation tests. 🤖 Generated with [Claude Code](https://claude.com/claude-code)