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Commits on Aug 4, 2024

[misc] update citation and copyright
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6ac098f
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Commits on Nov 26, 2023

[fix] exception handling of the sharg-parser
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aad68eb
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Commits on Jul 12, 2023

[misc] deactivate BIFM by default
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79f0bf0
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Commits on Apr 15, 2023

[misc] resolve many TODOs, get rid of regex parsing
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6333738
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Commits on Jan 9, 2023

[feature] compressed indexes
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73efbb0
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Commits on Dec 6, 2022

[misc] apply review comments and some cleanup
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168120c
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Commits on Nov 30, 2022

replace crufty manual io with biocpp-io
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c0f1b79
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Commits on Aug 17, 2022

[nop] reformat
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583f671
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Commits on Jul 15, 2022

[Feature] Add pre-filter for low seed complexity in nucleotide mode
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447bbde
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Commits on May 18, 2022

[fix] cpp20 default initialisation
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d5225dc
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Commits on Apr 1, 2021

[MISC] hardcode alphabets in view for simplicity
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2bd4ceb
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Commits on Mar 31, 2021

[Feature] Add second bisulfite index
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c1648c7
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Commits on Apr 16, 2020

Add bisulfite mode
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98feaa1
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Commits on Jan 28, 2020

[MISC] update copyright
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committed
0912b64
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[MISC] lot's of cleanup
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b5f113c
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[MISC] remove initHelper
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4a35d53
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[MISC] create multiple translation units [step1]
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8fbe250
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