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scverse

Foundational tools for omics data in the life sciences
README.md

scverse

Welcome to scverse®!

scverse® is a community that develops and maintains foundational tools for single-cell omics data analysis in primarily Python.

Here's how to get started:

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  1. scanpy scanpy Public

    Single-cell analysis in Python. Scales to >100M cells.

    Python 2.5k 757

  2. anndata anndata Public

    Annotated data.

    Python 761 204

  3. scvi-tools scvi-tools Public

    Deep probabilistic analysis of single-cell and spatial omics data

    Python 1.7k 472

  4. squidpy squidpy Public

    Spatial Single Cell Analysis in Python

    Python 587 117

  5. rapids-singlecell rapids-singlecell Public

    rapids-singlecell: GPU-accelerated framework for scRNA analysis

    Python 388 47

  6. pertpy pertpy Public

    Single-cell perturbation analysis

    Python 338 61

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