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Added Indexes on FeatureList#2

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Added Indexes on FeatureList#2
CarmeloFoti wants to merge 2 commits into
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This patch modifies the GFF-related classes.
Added a new method to the class GFF3Reader:

public static FeatureList read(String filename, List indexes)

this method will create an index for each attribute present in the List indexes. In this way, a massive improvement in performance will occur.

In addition, the String.split() method is now being used during the Feature creation (as it was suggested in the code comments).

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