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Commits on Mar 27, 2013
making atomcache more extensible. Now can be extended by DB-based implementation, rather than file system based.
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Commits on Mar 26, 2013
making sure this ends with the correct URL
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Commits on Mar 22, 2013
propagaingt server config to the remote domain lookup services
Show description for 1713e3dcommittedandreasnow threads sleep longer
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Commits on Mar 20, 2013
Minor bug fixes in AlignmentTools (rmsd calculation)
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Commits on Mar 19, 2013
updated toString method
Show description for 4815906committedandreasnew flag to update remediated files
Show description for 67b05d5committedandreasnew flag to update remediated files
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Commits on Mar 18, 2013
fixing a problem with 2F03
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Commits on Mar 16, 2013
using new cache path for storing chemp comps
Show description for 1fb275bcommittedandreasusing new cache path for storing chemp comps
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Commits on Mar 15, 2013
adding support for new parameter cacheFilePath to (optionally) allow to separate PDB files from other data
Show description for 8e88d80committedandreasadding support for new parameter cacheFilePath to (optionally) allow to separate PDB files from other data
Show description for 8699e84committedandreasadding support for new parameter cacheFilePath to (optionally) allow to separate PDB files from other data
Show description for df222dacommittedandreasadding support for new parameter cacheFilePath to (optionally) allow to separate PDB files from other data
Show description for 5d68745committedandreasadding support for new parameter cacheFilePath to (optionally) allow to separate PDB files from other data
Show description for bdb898dcommittedandreasadding support for new parameter cacheFilePath to (optionally) allow to separate PDB files from other data
Show description for 4add8b6committedandreasadding support for new parameter cacheFilePath to (optionally) allow to separate PDB files from other data
Show description for 8305d3fcommittedandreasadding support for new parameter cacheFilePath to (optionally) allow to separate PDB files from other data
Show description for b5aecfacommittedandreasadding support for new parameter cacheFilePath to (optionally) allow to separate PDB files from other data
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Commits on Mar 6, 2013
Added static methods to calculate rotation angle quickly
Show description for 84b428ccommittedblivensVisualize screw translation in RotationAxis
Show description for ac2dd3fcommittedblivensFixed bug with RotationAxis effecting a small fraction of 180 deg rotations
Show description for 8f40c7ccommittedblivens
Commits on Mar 5, 2013
new SparseSquareMatrix implementation
Show description for dbecd76committedandreasFixed a ArrayIndexOutBoundsException in CeCPMain resulting from a empty alignment and a similar issue in RotationAxis.
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Commits on Mar 2, 2013
demo for how load secstruc assignment from pdb file
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Commits on Mar 1, 2013
Fixed bug in RotationAxis position
Show description for 48dc0ebcommittedblivensRefactored RotationAxis & added documentation
Show description for 0c472adcommittedblivensMade AtomCache exception messages slightly more palatable, although they still get caught and rethrown multiple times
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Commits on Feb 28, 2013
better error message
Show description for 9c894c6committedandreaschecking for non-existing chem comps
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Commits on Feb 26, 2013
Forgot to commit AtomPositionMap's test; adding it now.
Show description for eb350c1committeddmyerstuSmall improvements to ResidueRange, AtomPosition, and ResidueNumber; added a few useful methods. No bug fixes.
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Commits on Feb 21, 2013
Added RotationAxis, which calculates (and displays) the axis of rotation for alignments.
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Commits on Feb 12, 2013
updating docu text
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