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@sbl-sdsc

Structural Bioinformatics Laboratory

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  1. mcp-proto-okn mcp-proto-okn Public

    A Model Context Protocol (MCP) server that provides tools for querying SPARQL endpoints, with specialized support for NSF-funded Proto-OKN (Prototype Open Knowledge Network) knowledge graphs hosted…

    Python 7 7

  2. mcp-okn mcp-okn Public

    Next Generation MCP service to query the NSF Open Knowledge Network Knowledge Graphs

    Python 2

  3. mcp-genelab mcp-genelab Public

    A Model Context Protocol (MCP) server for querying Neo4j Graph Databases with customized tools to query the NASA GeneLab Knowledge Graph

    Python 3 1

  4. kg-import kg-import Public

    kg-import automates the ingestion of heterogeneous datasets into a Knowledge Graph.

    Jupyter Notebook 6 4

  5. neo4j-ipycytoscape neo4j-ipycytoscape Public

    Demo of Neo4j graph visualization with the ipycytoscape Jupyter Lab extension

    Jupyter Notebook 4 6

  6. sparql-to-mermaid sparql-to-mermaid Public

    Render a SPARQL query as a Mermaid diagram (Python port of sparql-examples-utils' mermaid converter)

    Python

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