ALG_painter

This replaces the original sanger-tol/busco_painter scripts.

A Python package for the plotting and painting of ALG units to busco results resulting in a ALG assignment plot.

Currently, this is rather specific to the Merian Units assigned by Charlotte Wright based on odb10 output.

This package contains 3 subcommands:

painter - A re-write of the original script (by Charlotte Wright), by Karen van Neikerk, for the paining of ALG's onto busco full table.tsv files. This can optionally call the NCBI API
plotter - A python re-write of the original R script written by Charlotte Wright.
plotter_2 - A re-write originally intended for GenomeNote production, so includes specific colour palettes and other logic.

Installation

git clone github.com/sanger-tol/alg_painter.git

cd alg_painter/

uv pip install ./

alg -h

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README.md	README.md
pyproject.toml	pyproject.toml
ruff.toml	ruff.toml
uv.lock	uv.lock