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pennchildlanglab/tljh-datascience

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tljh-datascience

Tells TLJH to use DockerSpawner to spin up jupyter/datascience-notebook containers for each user. This makes it easy to include R and Julia Kernels for your JupyterHub users. Read more about what's included in the jupyter/datascience-notebook here.

The plugin also sets jupyterlab as the default interface.

Install

Include --plugin tljh-datascience in your TLJH install script. For example, here user kschuler with password password installs TLJH with tljh-datascience:

#!/bin/bash

curl https://raw.githubusercontent.com/jupyterhub/the-littlest-jupyterhub/master/bootstrap/bootstrap.py \
  | sudo python3 - \
    --admin kschuler:password --plugin git+https://github.com/pennchildlanglab/tljh-datascience

Customize docker images

To add other or different images for your users to select, edit the dockerspawner config file by SSH-ing into your server and running

sudo nano /opt/tljh/config/jupyterhub_config.d/dockerspawner_tljh_config.py

The current list of available images is in c.DockerSpawner.image_whitelist = ['jupyter/datascience-notebook:r-4.0.3', 'jupyter/datascience-notebook:r-3.6.6']. You can edit this list to include any docker images you want to make available to your users. Then reload the hub.

sudo tljh-config reload

The plugin currently pulls only one docker image, so other images will take a while to spin up the first time. If you want to pre-pull the images, you can also run the following, where <tag> is the specific tag for the image.

sudo docker pull jupyter/datascience-notebook:<tag>"

More advanced use

This plugin simply uses docker spawner to start user servers in the docker containers you make available in a list. For more complex use-cases, check out tljh-repo2docker plugin.

Attribution

This plugin was inspired by this Ideonate post and the Rxns stack plugin

To-do

  • figure out how to include jupyterlab plugins (probably just a docker image based on the datascience-notebook is the easiest)
  • we could prob do this without using subprocesses -- maybe require dockerspawner in the setup.py and then import it; and then just install docker.io via additional apt packages.

About

Plugin for TLJH to spin up jupyter/datascience-notebook containers for users (includes R and Julia kernels)

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