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User selector
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Commits on Apr 27, 2013
more clean up
Show description for f11b10dcommittedclean up
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Commits on Apr 23, 2013
Added process(int max) which tries to parse maximum max records from the
Show description for abe7d98committedbetter use of StringBuilder
Show description for 0fe3705committedFirst commit trial using Git. Just some documentation decoration.
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Commits on Jan 24, 2013
Adding a plain fasta header parser for atypical data header formats
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Commits on Nov 30, 2012
[maven-release-plugin] prepare for next development iteration
Show description for 6171169committed[maven-release-plugin] prepare release biojava-3.0.5
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Commits on Nov 19, 2012
Typo and format
Show description for 785fd2ecommittedTypo and format
Show description for c2b146fcommittedfixing a warning, by closing InputStream
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Commits on Nov 13, 2012
keeping a Deprecated stub to getConsituents() in order not t break old codes
Show description for d7b89a3committedTypo correction
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Commits on Nov 10, 2012
should take distribution config from parent
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Commits on May 22, 2012
[maven-release-plugin] prepare for next development iteration
Show description for c3a9b6ccommitted[maven-release-plugin] prepare release biojava-3.0.4
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Commits on Apr 30, 2012
default color is green not black
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Commits on Mar 27, 2012
Adding CasePreservingProteinSequenceCreator, which stores the case of the input string in the ProteinSequence user collection
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Commits on Mar 16, 2012
[maven-release-plugin] prepare for next development iteration
Show description for 80b45aacommitted[maven-release-plugin] prepare release biojava-3.0.3
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Commits on Feb 27, 2012
added another method to QualityFeature; also some javadoc
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Commits on Feb 26, 2012
fixed a typo in QualityFeature
Show description for d3dc5abcommittedadded a QualityFeature to hold quality information in DNASequences
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Commits on Feb 11, 2012
NCBIQBlastService replaced with the new implementation.
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Commits on Feb 8, 2012
adding patch from Hannes
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Commits on Jan 16, 2012
Simplified boolean expressions.
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Commits on Jan 11, 2012
Removed the case where length= at the end of a header would get parsed out. Requested by Hannes Brandstätter-Müller <biojava@hannes.oib.com>
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Commits on Jan 10, 2012
Changed instances of String concatenation in StringBuffer to use append.
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Commits on Dec 15, 2011
Commits on Oct 12, 2011
Fix Bug #3305 for not closing open file
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Commits on Oct 8, 2011
Added some documentation to functions that take 1-based indices, although there are definitely more which need documentation.
Show description for 73962aecommittedAdded the ability to fetch AminoAcidCompounds by 3 letter names
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Commits on Sep 21, 2011
moving from test section to main section
Show description for 99d4445committed- committed
Commits on Sep 19, 2011
moving StringManipulationTestsHelper to org.biojava3.core.util
Show description for 68a7b05committed