Skip to content

Navigation Menu

Sign in
Appearance settings

Search code, repositories, users, issues, pull requests...

Provide feedback

We read every piece of feedback, and take your input very seriously.

Saved searches

Use saved searches to filter your results more quickly

Appearance settings

Silence annoying pymbar warnings#77

Merged
dwhswenson merged 2 commits into
openpathsampling:mainopenpathsampling/openpathsampling-cli:mainfrom
dwhswenson:silence-pymbardwhswenson/openpathsampling-cli:silence-pymbarCopy head branch name to clipboard
Jun 11, 2024
Merged

Silence annoying pymbar warnings#77
dwhswenson merged 2 commits into
openpathsampling:mainopenpathsampling/openpathsampling-cli:mainfrom
dwhswenson:silence-pymbardwhswenson/openpathsampling-cli:silence-pymbarCopy head branch name to clipboard

Conversation

@dwhswenson

Copy link
Copy Markdown
Member

On importing OpenMMTools (which happens as part of reloading objects), we get some annoying warnings from pymbar. I'd like to try to get this fixed upstream in OpenMMTools, but for now here's a hack that makes it less unpleasant to work with the CLI.

@codecov

codecov Bot commented Jun 9, 2024

Copy link
Copy Markdown

Codecov Report

All modified and coverable lines are covered by tests ✅

Project coverage is 100.00%. Comparing base (b05951c) to head (1a9c964).
Report is 7 commits behind head on main.

Additional details and impacted files
@@            Coverage Diff            @@
##              main       #77   +/-   ##
=========================================
  Coverage   100.00%   100.00%           
=========================================
  Files          110       110           
  Lines         5416      5422    +6     
=========================================
+ Hits          5416      5422    +6     

☔ View full report in Codecov by Sentry.
📢 Have feedback on the report? Share it here.

@dwhswenson

Copy link
Copy Markdown
Member Author

This is ready for review and comment. Without review, I will merge this after at least 24 hours, no sooner than Tue 11 Jun 00:00 GMT (Mon 10 Jun 19:00 my local).

@sroet sroet left a comment

Copy link
Copy Markdown
Member

Choose a reason for hiding this comment

The reason will be displayed to describe this comment to others. Learn more.

LGTM.

I would add a TODO to mention that this should be removed once openmmtools is fixed. Feel free to ignore ;)

@dwhswenson dwhswenson merged commit d94f993 into openpathsampling:main Jun 11, 2024
@dwhswenson dwhswenson deleted the silence-pymbar branch June 11, 2024 02:26
@dwhswenson dwhswenson mentioned this pull request Jun 11, 2024
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment

Labels

Projects

None yet

Development

Successfully merging this pull request may close these issues.

2 participants

Morty Proxy This is a proxified and sanitized view of the page, visit original site.