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Pull requests: nextflow-io/nextflow

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86 Open 1,921 Closed
86 Open 1,921 Closed
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Pull requests list

Bring workflow outputs out of preview
#6487 opened Oct 14, 2025 by bentsherman • Draft 25.10
1
Optimize exit code handling by relying on scheduler status for successful executions
#6484 opened Oct 14, 2025 by jorgee Loading…
2
2
docs: Update trace table columns in reports.md
#6483 opened Oct 13, 2025 by JustinBellavance Loading…
1
Type checking support
#6482 opened Oct 13, 2025 by bentsherman • Draft 25.10
1
Make notifyEvent asynchronous
#6471 opened Oct 11, 2025 by rcannood Loading…
1
docs: Add admonition to inputs and index words
#6461 opened Oct 9, 2025 by christopher-hakkaart Loading…
6
Track remote input file in FileHolder
#6460 opened Oct 8, 2025 by bentsherman Loading… 25.10
1
2
Add .command.log redirection in K8s container command when Fusion is not enabled executor/k8s
#6455 opened Oct 7, 2025 by jorgee Loading…
3
Add staging events to the TraceObserverV2
#6443 opened Oct 2, 2025 by rcannood Loading…
1
8
Fix #6182: Add Google Batch LogsPolicy PATH option for GCS bucket log… executor/google-batch
#6431 opened Sep 26, 2025 by dglazer Loading…
4
enhance: Upgrade Claude Code hooks with advanced JSON reporting
#6429 opened Sep 25, 2025 by edmundmiller Loading…
@edmundmiller
2
Determine Azure directories more accurately using metadata and blob properties storage/azure
#6428 opened Sep 25, 2025 by adamrtalbot Loading…
1
10
Fix: tolerate spaces in $NXF_TASK_WORKDIR software/bash
#6421 opened Sep 23, 2025 by TheLostLambda Loading…
1
Limit S3 client connections when using virtual threads storage/aws
#6369 opened Aug 28, 2025 by jorgee Loading… 25.10
1
22
Typed processes lang/processes
#6368 opened Aug 27, 2025 by bentsherman Loading…
3 tasks done
25.10
1
112
Support running nextflow script in cygwin software/bash
#6367 opened Aug 27, 2025 by markwoon Loading…
5
Use Managed Identities with Azure to download and upload files executor/azure-batch
#6344 opened Aug 14, 2025 by adamrtalbot Loading…
1
Package directive
#6342 opened Aug 14, 2025 by edmundmiller • Draft
1
@edmundmiller
8
WIP: Capture all comments in parser
#6332 opened Aug 7, 2025 by ErikDanielsson • Draft
2
Add s3 checksum algorithm storage/aws
#6321 opened Jul 31, 2025 by jorgee • Draft 26.04
1
Use ECS properties instead of container properties executor/aws-batch
#6270 opened Jul 11, 2025 by jorgee Loading…
1
17
Prevent using Azure Low Priority VMs when using Batch Managed mode
#6267 opened Jul 10, 2025 by adamrtalbot • Draft
1
@adamrtalbot
5
Include support for git-remote-s3 software/git
#6260 opened Jul 9, 2025 by jorgee Loading…
5 tasks done
9
Ignore secrets in stub run
#6256 opened Jul 7, 2025 by bentsherman • Draft
1
1
Add SQLite based cache store
#6255 opened Jul 6, 2025 by pditommaso • Draft
1
4
ProTip! What’s not been updated in a month: updated:<2025-09-15.
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