Fix: tolerate spaces in $NXF_TASK_WORKDIR
#6421
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Prior to this commit, selecting a workDir with spaces or other special Bash characters in the pathname — like `(`, `)`, etc — would result in `cd $NXF_TASK_WORKDIR` failing. Now `$NXF_TASK_WORKDIR` is correctly quoted in the generated `.output.run` scripts. Signed-off-by: Brooks J Rady <b.j.rady@gmail.com>
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Prior to this commit, selecting a workDir with spaces or other special Bash characters in the pathname — like
(,), etc — would result incd $NXF_TASK_WORKDIRfailing. Now$NXF_TASK_WORKDIRis correctly quoted in the generated.output.runscripts.I just got into Nextflow yesterday, and this is my first time touching Groovy code, so let me know if you'd like to see this fix implemented in some other way!