A Dragonfly 3D World program to separate dendritic spine heads given a dendrite segmentation from serial electron microscopy data.

Proofreader tool for the DSB project. Remove and adjust spine head center candidates and compute head radii in 3D reconstructions of serial electron microscopy data.

Combine annotations in the Dragonfly 3D World Software

A semi-automatic Dragonfly 3D World plugin to compute the radius of dendritic spine heads in electron microscopy data. Requires a 3D mesh reconstruction of a dendrite.

A 3D implementation of the following paper, made as a plugin for the Dragonfly 3D World software: https://www.frontiersin.org/articles/10.3389/fnana.2013.00020/full#F2

A Dragonfly 3D World plugin to scale annotations. Useful when changing the voxel spacing of 3D image data.

🔬🥇🧠🍔 Automated Gold Particle Analysis For Freeze Fracture Replica Electron Microscopy Images

🧠🔍📊 A program to pair synapses with vesicles based on position, and quantify the alignment of these pairings.

A version of Gold Digger able to run via command line