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lycosystem/lyscripts

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Repository Coverage

Full report

Name Stmts Miss Cover Missing
src/lyscripts/__init__.py 30 7 77% 58-59, 67-73
src/lyscripts/__main__.py 3 3 0% 3-6
src/lyscripts/_version.py 11 0 100%
src/lyscripts/cli.py 45 26 42% 65-71, 85-91, 104-120
src/lyscripts/compute/__init__.py 5 1 80% 22
src/lyscripts/compute/__main__.py 5 5 0% 3-8
src/lyscripts/compute/evidence.py 65 41 37% 45, 60-61, 72-95, 124-192, 196-197
src/lyscripts/compute/posteriors.py 46 19 59% 97-137, 141-142
src/lyscripts/compute/prevalences.py 82 7 91% 60-62, 96-101, 235-236
src/lyscripts/compute/priors.py 35 2 94% 110-111
src/lyscripts/compute/risks.py 51 33 35% 47-65, 81-135, 139-140
src/lyscripts/compute/utils.py 118 6 95% 95, 146, 177, 188, 240, 250
src/lyscripts/configs.py 280 41 85% 90, 122, 165, 173, 217, 271, 277-278, 286, 472-474, 482, 491-492, 527-536, 547, 581-584, 589, 660, 699-712, 755
src/lyscripts/data/__init__.py 6 1 83% 53
src/lyscripts/data/__main__.py 18 18 0% 3-36
src/lyscripts/data/collect/__init__.py 58 27 53% 56-58, 64, 76, 92-116, 137-144
src/lyscripts/data/enhance.py 19 6 68% 40-48, 52-53
src/lyscripts/data/fetch.py 21 7 67% 42-52, 56-57
src/lyscripts/data/filter.py 48 30 38% 43-66, 76-94, 98-99
src/lyscripts/data/generate.py 35 4 89% 58, 63, 95-96
src/lyscripts/data/join.py 22 10 55% 61-77, 81-82
src/lyscripts/data/lyproxify.py 123 67 46% 31-34, 39-46, 90-119, 132-142, 173, 250-282, 293-307, 340-341
src/lyscripts/data/split.py 29 14 52% 33-65, 72-73
src/lyscripts/data/utils.py 9 0 100%
src/lyscripts/decorators.py 41 4 90% 53-55, 70
src/lyscripts/evaluate.py 70 52 26% 29-35, 43-70, 87, 102-103, 114-134, 139-197, 201-205
src/lyscripts/integrate.py 46 22 52% 46-53, 104-154, 162-163
src/lyscripts/plots.py 160 18 89% 46-47, 56, 185-186, 336, 341, 370-392, 399
src/lyscripts/sample.py 137 12 91% 35-36, 74, 132-135, 175, 191, 304, 425-426
src/lyscripts/schedule.py 11 5 55% 24-28, 32-33
src/lyscripts/schema.py 22 3 86% 61-62, 66
src/lyscripts/utils.py 84 5 94% 25, 141-142, 196-197
TOTAL 1735 496 71%

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Scripts and utilities for commonly used tasks related to the modelling of lymphatic tumor progression.

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