REXE = Rscript --vanilla

RBATCH = R --vanilla CMD BATCH --no-save

PANDOC = pandoc -s -t html5+smart --mathjax

ROOT_DIR := $(dir $(realpath $(lastword $(MAKEFILE_LIST))))

slides.pdf handout.pdf notes.pdf: main.tex

quiz.pdf quiz_soln.pdf: quiz_main.tex

.INTERMEDIATE: main.tex slides.tex handout.tex notes.tex \

quiz.tex quiz_soln.tex quiz_main.tex

%.html: %.Rmd

$(REXE) -e "rmarkdown::render(\"$*.Rmd\",output_format=\"html_document\")"

%.md: %.Rmd

$(REXE) -e "rmarkdown::render(\"$*.Rmd\",output_format=\"md_document\")"

%.html: %.md

$(REXE) -e "rmarkdown::render(\"$*.md\",output_format=\"html_document\")"

%.Rout: %.R

$(RBATCH) $*.R $@

%.Rout.save: %.R

$(RBATCH) $*.R $@

%.R: %.Rnw

$(REXE) -e "knitr::purl(\"$*.Rnw\",output=\"$*.R\",documentation=0)"

%.R: %.Rmd

$(REXE) -e "knitr::purl(\"$*.Rmd\",output=\"$*.R\",documentation=0)"

%.tex: %.Rnw

$(REXE) -e "knitr::knit(\"$*.Rnw\",output=\"$*.tex\")"

%.pdf: export BSTINPUTS=$(ROOT_DIR)

%.pdf: %.tex

pdflatex $*

bibtex $* || /bin/true

pdflatex $*

pdflatex $*

.clean:

$(RM) *.bak *.tmp

$(RM) *.o *.so

$(RM) *.log *.aux *.out *.blg *.toc *.nav *.snm *.vrb *.brf *.cut

$(RM) Rplots.*

.fresh: .clean

$(RM) *.bbl

$(RM) -r tmp

clean: .clean

fresh: .fresh