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1. cherimoya cherimoya Public

   Cherimoya is a lightweight sequence-to-function (S2F) model that is small, fast, and easy to use. Now usable by agents.

   Python 39 5

2. tangermeme tangermeme Public

   Biological sequence analysis for the modern age.

   Python 305 32

3. ledidi ledidi Public

   Ledidi turns any machine learning model into a biological sequence editor, allowing you to design sequences with desired properties.

   Python 107 5

4. apricot apricot Public

   apricot implements submodular optimization for the purpose of selecting subsets of massive data sets to train machine learning models quickly. See the documentation page: https://apricot-select.rea…

   Jupyter Notebook 534 53

5. bpnet-lite bpnet-lite Public

   This repository hosts a minimal version of a Python API for BPNet.

   Python 59 23

6. pomegranate pomegranate Public

   Fast, flexible and easy to use probabilistic modelling in Python.

   Python 3.5k 599