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Commits on May 20, 2015

• Fixing #275 and adding a test for it

  josemduarte

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Commits on Apr 28, 2015

• Run development/addlicense.sh

  sbliven

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• Add addlicense.sh script

  sbliven

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Commits on Apr 22, 2015

• fix #273 - the details field in _struct_ncs_oper is not mandatory and is missing in PDB ID 4X2S

  andreasprlic

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Commits on Apr 17, 2015

• Merge remote-tracking branch 'upstream/patch' into patch

  josemduarte

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• Fixing resizing problem in BiojavaJmol as in commit 52346f9

  josemduarte

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Commits on Apr 14, 2015

• Merge pull request #271 from lafita/patch

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  lafita

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Commits on Apr 10, 2015

• Removed AFPChain blockColors variable

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  lafita

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Commits on Apr 8, 2015

• Permission changes

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  lafita

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Commits on Mar 31, 2015

• Merge pull request #269 from lafita/patch

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  lafita

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• Fix #268: FatCat overwritten by Text

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  lafita

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Commits on Mar 30, 2015

• Fix #266 JmolPanel resize menu

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  lafita

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Commits on Mar 26, 2015

• Merge pull request #265 from lafita/patch

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  sbliven

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• For CE-Symm only, the rotation axis is shown in the 3D jmol display and

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  lafita

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• Changed back the StructureAlignmentJmol methods to static, passing the

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  lafita

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• Modified a test file for the AFPChain, because the blockScore variable

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  lafita

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Commits on Mar 25, 2015

• Fixed bug: CompoundFinder wasn't working for raw pdb files like 3ddo

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  josemduarte

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• Changed CeStartupParams to static

  lafita

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Commits on Mar 24, 2015

• Merge pull request #263 from jgrzebyta/patch

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  jgrzebyta

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• GenbankProxySequenceReaderTest: add identifier alias GID test

  jgrzebyta

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• add place for version and GenBank GI number in AccessionID class

  jgrzebyta

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• Added new methods to the AlignmentTools class: a method to calculate the

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  lafita

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Commits on Mar 23, 2015

• Added a new parameter to the AFPChain class to control the color of the

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  lafita

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Commits on Mar 20, 2015

• Added another test for CrystalBuilder

  josemduarte

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Commits on Mar 18, 2015

• Added a more complex test for NeedlemanWunsch using an alignment done by hand.

  

  dmyersturnbull

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  sbliven

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Commits on Mar 16, 2015

• Moved the notifymatrix listener and added some comments to the trace

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  lafita

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Commits on Mar 12, 2015

• Modified the updateSuperposition method to calculate also the RMSD and

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  lafita

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Commits on Mar 11, 2015

• Changed the DisplayAFP, line 76, to color correctly the alignment

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  lafita

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• Some #111

  josemduarte

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Commits on Mar 6, 2015

• Merge pull request #255 from jgrzebyta/patch

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  andreasprlic

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Commits on Feb 25, 2015

• Merge commit biojava/patch

  jgrzebyta

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• Merge pull request #256 from jgrzebyta/patch-timeout

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  andreasprlic

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Commits on Feb 24, 2015

• in case of TimeoutException try to repeat block 10 times

  jgrzebyta

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• increase timeout in downloadFile method to 60sec (build #636 had error)

  jgrzebyta

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• prepare more generic method to prepare ULRConnection with customised timeout

  jgrzebyta

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