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Commits on May 29, 2015

• Adding missing translation method

  josemduarte

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Commits on May 20, 2015

• Merge branch 'patch' into minor

  josemduarte

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• Fixing #275 and adding a test for it

  josemduarte

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Commits on May 13, 2015

• Adding isHomomeric

  josemduarte

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Commits on Apr 28, 2015

• Run development/addlicense.sh

  sbliven

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• Merge branch 'patch' into minor

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• Run development/addlicense.sh

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Commits on Apr 22, 2015

• fix #273 - the details field in _struct_ncs_oper is not mandatory and is missing in PDB ID 4X2S

  andreasprlic

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• fix #273 - the details field in _struct_ncs_oper is not mandatory and is missing in PDB ID 4X2S

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Commits on Apr 17, 2015

• Merge branch 'patch' into minor

  lafita

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• Fix bug with missing information

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  lafita

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Commits on Apr 15, 2015

• Merge branch 'patch' into minor

  sbliven

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• Allow single-residue ranges

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  sbliven

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• Updated PolymerType and ResidueType for mmCIF 4.052

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  sbliven

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• Be more flexible with incorrect structure ranges

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Commits on Apr 14, 2015

• Merge pull request #271 from lafita/patch

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  lafita

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Commits on Apr 13, 2015

• Changing nucleotide structural comparisons to use Phosphate atom

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Commits on Apr 10, 2015

• Removed AFPChain blockColors variable

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  lafita

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Commits on Apr 2, 2015

• Fixing divided by zero issue in averageScore

  josemduarte

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• Added averageSimilarityScore to StructureInterfaceCluster

  josemduarte

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• Now getAlignedResIndex will return -1 if there's seqres groups available

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• More clean-up: removed all warnings in structure package

  josemduarte

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• Fixing issue introduced in 543d730: mmcif parser was not doing

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Commits on Apr 1, 2015

• Merge pull request #270 from josemduarte/minor

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Commits on Mar 31, 2015

• Merge commit 'biojava/minor' into minor

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  sbliven

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• Merge remote-tracking branch 'main/patch' into minor

  sbliven

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• Fixed issue in contact overlap calculation, when residues of chains in

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  josemduarte

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Commits on Mar 30, 2015

• Renaming CrystalCell methods to clarify coordinate system

  sbliven

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Commits on Mar 27, 2015

• Removing additional newly deprecated methods

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• Fix ligand handling following support for RNA alignments.

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Commits on Mar 26, 2015

• Merge pull request #265 from lafita/patch

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• Replacing deprecated CA methods with the new ones

  sbliven

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• Reducing assumptions that structures are protein

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• New feature: Compound.getAlignedResIndex() to map residue numbers to

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  josemduarte

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• Modified a test file for the AFPChain, because the blockScore variable

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  lafita

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