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Commits on Sep 1, 2016

Move long tests to the intergationtest package
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lafita
committed
167750e
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Commits on Aug 31, 2016

Fix Calc centroid and center of mass documentation
lafita
committed
01287d7
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Commits on Aug 30, 2016

Small fix TestQsAlign
lafita
committed
72c6768
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Small change to SuperpositionQCP test
lafita
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83a4162
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Merge branch 'master' into quatalign
lafita
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11b3f23
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Commits on Aug 23, 2016

Merge pull request #555 from andreasprlic/master
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sbliven
authored
715fce4
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Commits on Aug 21, 2016

TestMMcifOrganismParsing: Using enum rather than String for comparison.
andviane
committed
d6c187b
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SymmetryTools.getResetVal: Do not compare NaNs with ==, use
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andviane
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b816a65
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Commits on Aug 19, 2016

Addressing @josemduarte 's comment to change log level for method.
andreasprlic
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4a1dbeb
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Commits on Aug 18, 2016

making output less verbose
andreasprlic
committed
56e81e6
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making output less verbose
andreasprlic
committed
0b2fe0a
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making output less verbose
andreasprlic
committed
8ba289d
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setting default log level to warn
andreasprlic
committed
07f244a
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making output less verbose
andreasprlic
committed
1960a4b
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making output less verbose
andreasprlic
committed
de35dd8
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making output less verbose
andreasprlic
committed
08ed01f
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making output less verbose
andreasprlic
committed
7817e94
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Deprecating methods that got used to the Chain interface.
andreasprlic
committed
814f188
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moving utility classes to detect type of Chain to the Chain interface level (used to be StructureTools).
andreasprlic
committed
96d8baa
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Commits on Aug 17, 2016

adding check for lPeptideLinking to isPolymeric
andreasprlic
committed
8307f59
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Merge branch 'master' of github.com:biojava/biojava
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andreasprlic
committed
f1d187e
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Making recent MmtfActions.writeToOutputStream static
sbliven
committed
e5c730d
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Commits on Aug 16, 2016

Fix the doc
abradle
committed
77237f3
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Update the outputstream to be created outside the function
abradle
committed
f69b182
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Merge branch 'master' of github.com:biojava/biojava
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andreasprlic
committed
50ed273
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Write MMTF to an OutputStream
abradle
committed
0b42061
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Fixed the logic of working out which type of group a group is.
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abradle
committed
566d41c
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Fixed the formatting and added some javadocs
abradle
committed
ad85634
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Commits on Aug 15, 2016

Merge branch 'master' of github.com:biojava/biojava
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andreasprlic
committed
7d39984
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Fixed handling of entities with no chains
abradle
committed
95a409b
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Fixed a null pointer exception from getAtomFromRecord
abradle
committed
8789bb5
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Added handling of different residue types.
abradle
committed
965dc23
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Fixed a bug in generation of disulphide bonds - including a test case.
abradle
committed
636929b
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Commits on Aug 12, 2016

Added support for D-GAMMA-PEPTIDE being a heatatm (as with mmCIF) not an amino.
abradle
committed
ffaa1c7
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Commits on Aug 11, 2016

Minor javadoc & warnings fixes
sbliven
committed
1bf0202
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