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Commits on Aug 25, 2016

• Merge branch 'pr/44'

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  emckee2006

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• add ability to pull gene and protein aliases from uniprot

  emckee2006

  committed
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Commits on Aug 23, 2016

• Merge pull request #555 from andreasprlic/master

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  sbliven

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Commits on Aug 21, 2016

• GenericInsdcHeaderFormat: Fixed formatting codes.

  andviane

  committed
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Commits on Aug 18, 2016

• making output less verbose

  andreasprlic

  committed
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• setting default log level to warn

  andreasprlic

  committed
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• making output less verbose

  andreasprlic

  committed
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Commits on Aug 16, 2016

• updating to latest version of Cobertura tests. Now can successfully run locally.

  andreasprlic

  committed
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Commits on Jul 4, 2016

• Merge pull request #525 from andreasprlic/master

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  josemduarte

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• Merge pull request #519 from DevFactory/release--inefficient-string-buffering-fix-1

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  josemduarte

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Commits on Jul 1, 2016

• Cleanup - squid:S1858 - "toString()" should never be called on a String object

  

  Mohamed Ezzat

  committed
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• pmd:InefficientStringBuffering - Inefficient String Buffering

  

  Mohamed Ezzat

  committed
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Commits on Jun 30, 2016

• #505 switching to https for all NCBI utils traffic.

  andreasprlic

  committed
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• #505 switching to https for all NCBI utils traffic.

  andreasprlic

  committed
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Commits on Jun 27, 2016

• Normalize percentage of identity by the length without gaps #521

  lafita

  committed
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Commits on Jun 24, 2016

• Implement tests for new utility methods in sequence objects #491

  lafita

  committed
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• Method for total gapped positions and coverage in aligned sequences

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  lafita

  committed
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• Method for percentage of identity of a sequence pair #491

  lafita

  committed
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Commits on Jun 16, 2016

• squid:S2272 - "Iterator.next()" methods should throw "NoSuchElementException"

  

  Mohamed Ezzat

  committed
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Commits on Jun 15, 2016

• squid:S2063 - Comparators should be Serializable

  

  Mohamed Ezzat

  committed
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Commits on Jun 10, 2016

• squid:S2130 - Parsing should be used to convert Strings to primitives

  

  Mohamed Ezzat

  committed
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Commits on Jun 9, 2016

• Merge pull request #499 from DevFactory/release--primitives-should-not-be-boxed-just-for-String-conversion-fix-1

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  andreasprlic

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Commits on Jun 5, 2016

• squid:S2131 - Primitives should not be boxed just for String conversion

  

  Mohamed Ezzat

  committed
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Commits on Jun 4, 2016

• squid:S1197 - Array designators should be on the type, not the variable

  

  Mohamed Ezzat

  committed
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Commits on Jun 3, 2016

• squid:S1125 - Literal boolean values should not be used in condition expressions

  

  Mohamed Ezzat

  committed
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Commits on Mar 10, 2016

• Running spacestotabs on recent changes

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  sbliven

  committed
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Commits on Mar 9, 2016

• Removing unnecessary casts

  sbliven

  committed
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• More whitespace fixes

  sbliven

  committed
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• Removing unused imports

  sbliven

  committed
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• Automatically adding missing @Override

  sbliven

  committed
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• Converting initial spaces to tabs.

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  sbliven

  committed
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• Removing template messages

  sbliven

  committed
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• Remove trailing whitespace globally from .java files

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  sbliven

  committed
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• Running addlicense.sh

  sbliven

  committed
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Commits on Mar 7, 2016

• Make classes serializable for Spark

  abradle

  committed
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