Pull requests: draeger-lab/SBSCL
Pull requests list
feat: Implement explicit Tau-Leaping Simulator with Mockito unit tests
enhancement
#111
opened Apr 20, 2026 by
dyrpsf
Contributor
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Refactor: Migrate from JUL to SLF4J API in SBMLinterpreter
enhancement
#110
opened Apr 18, 2026 by
dyrpsf
Contributor
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Refactor: Integrate FERN with native SBSCL SBMLinterpreter (Resolves #55)
enhancement
stochastic-simulation
#109
opened Apr 13, 2026 by
dyrpsf
Contributor
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Fix #39: Resolve 25-minute stochastic test hang using deterministic Random seeding
enhancement
#108
opened Mar 27, 2026 by
dyrpsf
Contributor
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WIP: Scaffold Python/Docker CLI architecture for BioSimulators curation (#68)
enhancement
#106
opened Mar 19, 2026 by
dyrpsf
Contributor
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Use correct time in event triggers and re-enable SBML time-based event tests
bug
#104
opened Feb 26, 2026 by
dyrpsf
Contributor
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Respect delay in rateOf for rate-rule variables and re-enable SBML Test Suite cases
enhancement
#103
opened Feb 9, 2026 by
dyrpsf
Contributor
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Add basic FROG report generation for FBA models
enhancement
sbml-fbc
SBML models with FBC extension
#102
opened Feb 5, 2026 by
dyrpsf
Contributor
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Align ODE dependencies: add Commons Math 3.x alongside 2.x (#92)
on hold
Paused until a prerequisite is completed
#98
opened Jan 6, 2026 by
dyrpsf
Contributor
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Raise Java baseline to 17 and clean XML parsers for JDK 22+
on hold
Paused until a prerequisite is completed
#97
opened Jan 5, 2026 by
dyrpsf
Contributor
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Fix misinterpretation of function arguments with parameters (#45)
#96
opened Jan 4, 2026 by
dyrpsf
Contributor
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Bump org.jdom:jdom2 from 2.0.5 to 2.0.6.1
dependencies
Pull requests that update a dependency file
java
Pull requests that update java code
#93
opened Sep 16, 2025 by
dependabot
Bot
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Feat: set Work in progress
OptSolvX as default LP backend; add SBML-FBC→LP bridge
in progress
#90
opened Aug 21, 2025 by
xts-Michi
Collaborator
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Add OptSolvX adapter, demo, tests, and docs (initial SBSCL integration)
in progress
Work in progress
#88
opened Aug 10, 2025 by
xts-Michi
Collaborator
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